Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
Complex hasComponent +
BlackBoxEvent input +
FailedReaction input +
Polymerisation input +
Reaction input +
ReactionlikeEvent input +
Depolymerisation input +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
OpenSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
_Deleted replacementInstances +
Polymer repeatedUnit +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation output +
ReactionlikeEvent output +
Reaction output +
BlackBoxEvent output +
Polymerisation output +
FailedReaction output +
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
Drug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ChemicalDrug inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
DefinedSet inferredFrom +
RNADrug inferredFrom +
EntitySet inferredFrom +
OtherEntity inferredFrom +
CandidateSet inferredFrom +
OpenSet inferredFrom +
Polymer inferredTo +
Complex inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
ChemicalDrug inferredTo +
Drug inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
OpenSet inferredTo +
CandidateSet inferredTo +
DefinedSet inferredTo +
RNADrug inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
VertexSearchableTerm termProvider +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CandidateSet hasCandidate +
EntityVertex representedInstance 1
ConcurrentEventSet focusEntity +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.