Reactome: A Curated Pathway Database

Attributes of class 'Complex'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
entityOnOtherCell + INSTANCE PhysicalEntity Complex   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasComponent + INSTANCE PhysicalEntity Complex ALL INTEGER(10) UNSIGNED
includedLocation + INSTANCE EntityCompartment Complex   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Complex   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
interactionIdentifier + INSTANCE DatabaseIdentifier Complex   INTEGER(10) UNSIGNED
isChimeric 1 OTHER N/A Complex   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Complex   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Complex   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Complex   TEXT

Referers of class 'Complex' instances

Class name Attribute name Cardinality
Regulation activeUnit +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
CandidateSet hasCandidate +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
OpenSet inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
GenomeEncodedEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
SimpleEntity inferredFrom +
ConcurrentEventSet focusEntity +
Complex hasComponent +
EntitySet hasMember +
CandidateSet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
PhysicalEntity inferredTo +
OtherEntity inferredTo +
OpenSet inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
Polymer repeatedUnit +
Reaction input +
Depolymerisation input +
Polymerisation input +
BlackBoxEvent input +
FailedReaction input +
ReactionlikeEvent input +
FailedReaction output +
ReactionlikeEvent output +
Reaction output +
Depolymerisation output +
Polymerisation output +
BlackBoxEvent output +
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
VertexSearchableTerm termProvider +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
_Deleted replacementInstances +
EntityVertex representedInstance 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.