Reactome: A Curated Pathway Database

Attributes of class 'EntitySet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'EntitySet' instances

Class name Attribute name Cardinality
Polymerisation input +
Reaction input +
Depolymerisation input +
ReactionlikeEvent input +
FailedReaction input +
BlackBoxEvent input +
EntityVertex representedInstance 1
FailedReaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
ConcurrentEventSet focusEntity +
VertexSearchableTerm termProvider +
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
OpenSet hasMember +
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
Complex hasComponent +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
SimpleEntity inferredFrom +
OpenSet inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
Complex inferredTo +
EntitySet inferredTo +
OpenSet inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
Polymer repeatedUnit +
FailedReaction output +
BlackBoxEvent output +
Polymerisation output +
Depolymerisation output +
Reaction output +
ReactionlikeEvent output +
CandidateSet hasCandidate +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
PositiveGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.