Reactome: A Curated Pathway Database

Attributes of class 'CandidateSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasCandidate + INSTANCE PhysicalEntity CandidateSet ALL INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'CandidateSet' instances

Class name Attribute name Cardinality
Polymer repeatedUnit +
VertexSearchableTerm termProvider +
Complex hasComponent +
_Deleted replacementInstances +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
OpenSet inferredTo +
GenomeEncodedEntity inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
OpenSet inferredFrom +
CandidateSet hasCandidate +
ReactionlikeEvent input +
Depolymerisation input +
Polymerisation input +
Reaction input +
BlackBoxEvent input +
FailedReaction input +
DefinedSet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
ConcurrentEventSet focusEntity +
PositiveRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Requirement regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
FailedReaction output +
BlackBoxEvent output +
Polymerisation output +
Reaction output +
ReactionlikeEvent output +
Depolymerisation output +
EntityVertex representedInstance 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.