Reactome: A Curated Pathway Database

Attributes of class 'DatabaseIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier DatabaseIdentifier   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A DatabaseIdentifier ALL varchar(20)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
referenceDatabase 1 INSTANCE ReferenceDatabase DatabaseIdentifier ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'DatabaseIdentifier' instances

Class name Attribute name Cardinality
PhysicalEntity crossReference +
ReferenceEntity crossReference +
ReferenceMolecule crossReference +
EntitySet crossReference +
OpenSet crossReference +
ReferenceSequence crossReference +
DefinedSet crossReference +
Polymer crossReference +
GenomeEncodedEntity crossReference +
CandidateSet crossReference +
Species crossReference +
Person crossReference +
BlackBoxEvent crossReference +
OtherEntity crossReference +
ReferenceGroup crossReference +
ReferenceRNASequence crossReference +
Event crossReference +
FailedReaction crossReference +
Complex crossReference +
DatabaseIdentifier crossReference +
Taxon crossReference +
Polymerisation crossReference +
ReferenceDNASequence crossReference +
Depolymerisation crossReference +
Reaction crossReference +
ReferenceIsoform crossReference +
EntityWithAccessionedSequence crossReference +
ReferenceGeneProduct crossReference +
SimpleEntity crossReference +
Pathway crossReference +
ReactionlikeEvent crossReference +
VertexSearchableTerm termProvider +
Complex interactionIdentifier +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.