Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
_Deleted replacementInstances +
EntityVertex representedInstance 1
Complex hasComponent +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
FailedReaction input +
Depolymerisation input +
Polymerisation input +
ReactionlikeEvent input +
Reaction input +
BlackBoxEvent input +
BlackBoxEvent output +
Depolymerisation output +
Polymerisation output +
ReactionlikeEvent output +
Reaction output +
FailedReaction output +
Polymer repeatedUnit +
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Polymer inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
OpenSet inferredFrom +
DefinedSet inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
OpenSet inferredTo +
Complex inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
EntitySet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
VertexSearchableTerm termProvider +
PositiveRegulation activeUnit +
Regulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
Requirement regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
ConcurrentEventSet focusEntity +
CandidateSet hasCandidate +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.