Reactome: A Curated Pathway Database

Attributes of class 'EntityCompartment'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'EntityCompartment' instances

Class name Attribute name Cardinality
GO_CellularComponent hasPart +
Compartment hasPart +
EntityCompartment hasPart +
Complex includedLocation +
ReactionlikeEvent compartment +
Event compartment +
DefinedSet compartment +
PhysicalEntity compartment +
Polymerisation compartment +
SimpleEntity compartment +
EntityWithAccessionedSequence compartment +
EntitySet compartment +
OtherEntity compartment +
BlackBoxEvent compartment +
Depolymerisation compartment +
OpenSet compartment +
GenomeEncodedEntity compartment +
Polymer compartment +
CandidateSet compartment +
Pathway compartment +
Reaction compartment +
FailedReaction compartment +
Complex compartment +
CandidateSet goCellularComponent 1
PhysicalEntity goCellularComponent 1
DefinedSet goCellularComponent 1
Polymer goCellularComponent 1
OpenSet goCellularComponent 1
GenomeEncodedEntity goCellularComponent 1
OtherEntity goCellularComponent 1
Complex goCellularComponent 1
EntitySet goCellularComponent 1
SimpleEntity goCellularComponent 1
EntityWithAccessionedSequence goCellularComponent 1
GO_CellularComponent componentOf +
EntityCompartment componentOf +
Compartment componentOf +
EntityCompartment instanceOf +
Compartment instanceOf +
GO_CellularComponent instanceOf +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.