Reactome: A Curated Pathway Database

Attributes of class 'GO_BiologicalProcess'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_BiologicalProcess ANY TEXT
componentOf + INSTANCE GO_MolecularFunction
GO_BiologicalProcess
GO_BiologicalProcess   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_BiologicalProcess   TEXT
hasPart + INSTANCE GO_MolecularFunction
GO_BiologicalProcess
GO_BiologicalProcess   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_BiologicalProcess GO_BiologicalProcess   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_BiologicalProcess   TEXT
negativelyRegulate + INSTANCE GO_MolecularFunction
GO_BiologicalProcess
GO_BiologicalProcess   INTEGER(10) UNSIGNED
positivelyRegulate + INSTANCE GO_MolecularFunction
GO_BiologicalProcess
GO_BiologicalProcess   INTEGER(10) UNSIGNED
referenceDatabase 1 INSTANCE ReferenceDatabase GO_BiologicalProcess   INTEGER(10) UNSIGNED
regulate + INSTANCE GO_MolecularFunction
GO_BiologicalProcess
GO_BiologicalProcess   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'GO_BiologicalProcess' instances

Class name Attribute name Cardinality
GO_MolecularFunction negativelyRegulate +
GO_BiologicalProcess negativelyRegulate +
GO_MolecularFunction positivelyRegulate +
GO_BiologicalProcess positivelyRegulate +
VertexSearchableTerm termProvider +
Event goBiologicalProcess 1
FailedReaction goBiologicalProcess 1
Polymerisation goBiologicalProcess 1
Depolymerisation goBiologicalProcess 1
Reaction goBiologicalProcess 1
Pathway goBiologicalProcess 1
ReactionlikeEvent goBiologicalProcess 1
BlackBoxEvent goBiologicalProcess 1
GO_MolecularFunction componentOf +
GO_BiologicalProcess componentOf +
GO_MolecularFunction hasPart +
GO_BiologicalProcess hasPart +
GO_MolecularFunction regulate +
GO_BiologicalProcess regulate +
GO_BiologicalProcess instanceOf +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.