Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Polymer reviewed +
EntityWithAccessionedSequence reviewed +
BlackBoxEvent reviewed +
Requirement reviewed +
Complex reviewed +
PhysicalEntity reviewed +
Reaction reviewed +
DefinedSet reviewed +
Event reviewed +
PositiveGeneExpressionRegulation reviewed +
CandidateSet reviewed +
PositiveRegulation reviewed +
OtherEntity reviewed +
GenomeEncodedEntity reviewed +
Regulation reviewed +
Depolymerisation reviewed +
SimpleEntity reviewed +
ReactionlikeEvent reviewed +
NegativeRegulation reviewed +
Pathway reviewed +
OpenSet reviewed +
NegativeGeneExpressionRegulation reviewed +
Polymerisation reviewed +
FailedReaction reviewed +
EntitySet reviewed +
_InstanceBeforeChange instanceEdit 1
GenomeEncodedEntity edited +
SimpleEntity edited +
Depolymerisation edited +
Regulation edited +
EntitySet edited +
FailedReaction edited +
Polymerisation edited +
ReactionlikeEvent edited +
OpenSet edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
NegativeRegulation edited +
PositiveGeneExpressionRegulation edited +
Event edited +
DefinedSet edited +
Polymer edited +
EntityWithAccessionedSequence edited +
Reaction edited +
PhysicalEntity edited +
Requirement edited +
BlackBoxEvent edited +
Complex edited +
OtherEntity edited +
CandidateSet edited +
PositiveRegulation edited +
ModifiedResidue modified +
Species modified +
EntityCompartment modified +
ReferenceSequence modified +
Polymerisation modified +
NegativeRegulation modified +
PositiveGeneExpressionRegulation modified +
Event modified +
ReferenceGroup modified +
PathwayDiagramItem modified +
DefinedSet modified +
GroupModifiedResidue modified +
PsiMod modified +
Book modified +
Polymer modified +
PhysicalEntity modified +
Complex modified +
ReactionVertex modified +
EntityVertex modified +
PathwayVertex modified +
Compartment modified +
Summation modified +
_Release modified +
EvidenceType modified +
PositiveRegulation modified +
Edge modified +
DatabaseObject modified +
URL modified +
GenomeEncodedEntity modified +
SimpleEntity modified +
Disease modified +
TranslationalModification modified +
_Deleted modified +
EntitySet modified +
FailedReaction modified +
DatabaseIdentifier modified +
ReactionlikeEvent modified +
InstanceEdit modified +
ReferenceDatabase modified +
SequenceOntology modified +
PathwayCoordinates modified +
ReferenceIsoform modified +
Figure modified +
CellType modified +
GeneticallyModifiedResidue modified +
CandidateSet modified +
FragmentInsertionModification modified +
FunctionalStatusType modified +
ExternalOntology modified +
FrontPage modified +
FunctionalStatus modified +
ReferenceGeneProduct modified +
Depolymerisation modified +
Regulation modified +
ReactionCoordinates modified +
_InstanceBeforeChange modified +
Vertex modified +
Affiliation modified +
ControlledVocabulary modified +
OpenSet modified +
EntityFunctionalStatus modified +
Pathway modified +
ReferenceEntity modified +
CatalystActivity modified +
GO_BiologicalProcess modified +
Person modified +
FragmentReplacedModification modified +
ReferenceMolecule modified +
StableIdentifier modified +
GO_MolecularFunction modified +
Taxon modified +
CrosslinkedResidue modified +
VertexSearchableTerm modified +
ReplacedResidue modified +
Publication modified +
ConcurrentEventSet modified +
NegativeGeneExpressionRegulation modified +
PathwayDiagram modified +
LiteratureReference modified +
FragmentDeletionModification modified +
InterChainCrosslinkedResidue modified +
EntityWithAccessionedSequence modified +
Reaction modified +
ReferenceDNASequence modified +
BlackBoxEvent modified +
Requirement modified +
ReferenceRNASequence modified +
IntraChainCrosslinkedResidue modified +
GO_CellularComponent modified +
OtherEntity modified +
DeletedControlledVocabulary modified +
_AttributeValueBeforeChange modified +
AbstractModifiedResidue modified +
FragmentModification modified +
ReactionlikeEvent revised +
Pathway revised +
NegativeRegulation revised +
OpenSet revised +
NegativeGeneExpressionRegulation revised +
Polymerisation revised +
FailedReaction revised +
EntitySet revised +
GenomeEncodedEntity revised +
Regulation revised +
SimpleEntity revised +
Depolymerisation revised +
CandidateSet revised +
PositiveRegulation revised +
OtherEntity revised +
EntityWithAccessionedSequence revised +
Polymer revised +
BlackBoxEvent revised +
Complex revised +
Requirement revised +
Reaction revised +
PhysicalEntity revised +
DefinedSet revised +
PositiveGeneExpressionRegulation revised +
Event revised +
EntityWithAccessionedSequence created 1
ReferenceRNASequence created 1
BlackBoxEvent created 1
Requirement created 1
ReferenceDNASequence created 1
Reaction created 1
FragmentDeletionModification created 1
LiteratureReference created 1
InterChainCrosslinkedResidue created 1
DeletedControlledVocabulary created 1
AbstractModifiedResidue created 1
FragmentModification created 1
_AttributeValueBeforeChange created 1
GO_CellularComponent created 1
OtherEntity created 1
IntraChainCrosslinkedResidue created 1
VertexSearchableTerm created 1
PathwayDiagram created 1
NegativeGeneExpressionRegulation created 1
ConcurrentEventSet created 1
ReplacedResidue created 1
Publication created 1
CatalystActivity created 1
ReferenceEntity created 1
GO_BiologicalProcess created 1
StableIdentifier created 1
GO_MolecularFunction created 1
CrosslinkedResidue created 1
Taxon created 1
Person created 1
FragmentReplacedModification created 1
ReferenceMolecule created 1
ReferenceGeneProduct created 1
FunctionalStatus created 1
Regulation created 1
Depolymerisation created 1
ExternalOntology created 1
FrontPage created 1
Affiliation created 1
Vertex created 1
Pathway created 1
EntityFunctionalStatus created 1
ControlledVocabulary created 1
OpenSet created 1
ReactionCoordinates created 1
_InstanceBeforeChange created 1
SequenceOntology created 1
ReferenceDatabase created 1
ReferenceIsoform created 1
PathwayCoordinates created 1
InstanceEdit created 1
CandidateSet created 1
FragmentInsertionModification created 1
FunctionalStatusType created 1
GeneticallyModifiedResidue created 1
CellType created 1
Figure created 1
GenomeEncodedEntity created 1
TranslationalModification created 1
Disease created 1
SimpleEntity created 1
DatabaseObject created 1
URL created 1
Edge created 1
ReactionlikeEvent created 1
DatabaseIdentifier created 1
_Deleted created 1
FailedReaction created 1
EntitySet created 1
Book created 1
Polymer created 1
Complex created 1
PhysicalEntity created 1
DefinedSet created 1
PositiveGeneExpressionRegulation created 1
Event created 1
PathwayDiagramItem created 1
ReferenceGroup created 1
GroupModifiedResidue created 1
PsiMod created 1
_Release created 1
Summation created 1
EvidenceType created 1
Compartment created 1
PositiveRegulation created 1
EntityVertex created 1
ReactionVertex created 1
PathwayVertex created 1
Species created 1
EntityCompartment created 1
ModifiedResidue created 1
NegativeRegulation created 1
Polymerisation created 1
ReferenceSequence created 1
GenomeEncodedEntity authored 1
SimpleEntity authored 1
Depolymerisation authored +
Regulation authored 1
ReactionlikeEvent authored +
NegativeGeneExpressionRegulation authored 1
OpenSet authored 1
NegativeRegulation authored 1
Pathway authored +
EntitySet authored 1
Polymerisation authored +
FailedReaction authored +
Polymer authored 1
EntityWithAccessionedSequence authored 1
Reaction authored +
PhysicalEntity authored 1
BlackBoxEvent authored +
Requirement authored 1
Complex authored 1
Event authored +
PositiveGeneExpressionRegulation authored 1
DefinedSet authored 1
CandidateSet authored 1
PositiveRegulation authored 1
OtherEntity authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.