Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
EntityWithAccessionedSequence edited +
PositiveGeneExpressionRegulation edited +
Depolymerisation edited +
Regulation edited +
Reaction edited +
OtherEntity edited +
OpenSet edited +
CandidateSet edited +
PhysicalEntity edited +
Requirement edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
Polymer edited +
ReactionlikeEvent edited +
EntitySet edited +
DefinedSet edited +
Event edited +
GenomeEncodedEntity edited +
NegativeRegulation edited +
FailedReaction edited +
PositiveRegulation edited +
SimpleEntity edited +
Complex edited +
BlackBoxEvent edited +
Polymerisation edited +
_InstanceBeforeChange instanceEdit 1
Event modified +
_AttributeValueBeforeChange modified +
FragmentModification modified +
Vertex modified +
ReactionlikeEvent modified +
ReferenceIsoform modified +
ReferenceDNASequence modified +
Compartment modified +
CandidateSet modified +
Figure modified +
PathwayCoordinates modified +
Regulation modified +
GO_CellularComponent modified +
_Release modified +
OpenSet modified +
URL modified +
FunctionalStatusType modified +
Summation modified +
Book modified +
ReplacedResidue modified +
DefinedSet modified +
Pathway modified +
Polymer modified +
PhysicalEntity modified +
ReferenceRNASequence modified +
FragmentInsertionModification modified +
GroupModifiedResidue modified +
ReactionCoordinates modified +
Complex modified +
Depolymerisation modified +
VertexSearchableTerm modified +
FragmentDeletionModification modified +
Taxon modified +
PsiMod modified +
TranslationalModification modified +
AbstractModifiedResidue modified +
DatabaseIdentifier modified +
ReferenceGroup modified +
GO_BiologicalProcess modified +
OtherEntity modified +
Reaction modified +
DatabaseObject modified +
EntityVertex modified +
NegativeGeneExpressionRegulation modified +
Publication modified +
Disease modified +
Affiliation modified +
ReferenceMolecule modified +
Polymerisation modified +
CatalystActivity modified +
FragmentReplacedModification modified +
BlackBoxEvent modified +
ConcurrentEventSet modified +
SimpleEntity modified +
NegativeRegulation modified +
GenomeEncodedEntity modified +
InterChainCrosslinkedResidue modified +
Species modified +
EntityWithAccessionedSequence modified +
FunctionalStatus modified +
PositiveGeneExpressionRegulation modified +
ReferenceEntity modified +
CellType modified +
StableIdentifier modified +
GeneticallyModifiedResidue modified +
PathwayVertex modified +
FrontPage modified +
ReferenceDatabase modified +
LiteratureReference modified +
EntitySet modified +
EntityFunctionalStatus modified +
Person modified +
Requirement modified +
ReferenceGeneProduct modified +
ModifiedResidue modified +
PathwayDiagramItem modified +
_Deleted modified +
_InstanceBeforeChange modified +
ExternalOntology modified +
SequenceOntology modified +
GO_MolecularFunction modified +
ReactionVertex modified +
FailedReaction modified +
PositiveRegulation modified +
CrosslinkedResidue modified +
PathwayDiagram modified +
DeletedControlledVocabulary modified +
InstanceEdit modified +
IntraChainCrosslinkedResidue modified +
ReferenceSequence modified +
EntityCompartment modified +
Edge modified +
EvidenceType modified +
ControlledVocabulary modified +
Regulation reviewed +
Depolymerisation reviewed +
PositiveGeneExpressionRegulation reviewed +
EntityWithAccessionedSequence reviewed +
OpenSet reviewed +
Reaction reviewed +
OtherEntity reviewed +
Polymer reviewed +
Requirement reviewed +
NegativeGeneExpressionRegulation reviewed +
Pathway reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
Event reviewed +
EntitySet reviewed +
CandidateSet reviewed +
PhysicalEntity reviewed +
BlackBoxEvent reviewed +
Complex reviewed +
Polymerisation reviewed +
FailedReaction reviewed +
PositiveRegulation reviewed +
NegativeRegulation reviewed +
GenomeEncodedEntity reviewed +
SimpleEntity reviewed +
OtherEntity revised +
Reaction revised +
OpenSet revised +
PositiveGeneExpressionRegulation revised +
EntityWithAccessionedSequence revised +
Regulation revised +
Depolymerisation revised +
SimpleEntity revised +
FailedReaction revised +
NegativeRegulation revised +
PositiveRegulation revised +
GenomeEncodedEntity revised +
Polymerisation revised +
BlackBoxEvent revised +
Complex revised +
PhysicalEntity revised +
CandidateSet revised +
DefinedSet revised +
Event revised +
EntitySet revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
Pathway revised +
ReactionlikeEvent revised +
Polymer revised +
Reaction authored +
OtherEntity authored 1
OpenSet authored 1
PositiveGeneExpressionRegulation authored 1
EntityWithAccessionedSequence authored 1
Regulation authored 1
Depolymerisation authored +
FailedReaction authored +
NegativeRegulation authored 1
PositiveRegulation authored 1
GenomeEncodedEntity authored 1
SimpleEntity authored 1
BlackBoxEvent authored +
Complex authored 1
Polymerisation authored +
CandidateSet authored 1
PhysicalEntity authored 1
NegativeGeneExpressionRegulation authored 1
Requirement authored 1
Polymer authored 1
Pathway authored +
ReactionlikeEvent authored +
DefinedSet authored 1
Event authored +
EntitySet authored 1
FunctionalStatus created 1
EntityWithAccessionedSequence created 1
PositiveGeneExpressionRegulation created 1
InterChainCrosslinkedResidue created 1
Species created 1
ReferenceDatabase created 1
PathwayVertex created 1
FrontPage created 1
ReferenceEntity created 1
GeneticallyModifiedResidue created 1
StableIdentifier created 1
CellType created 1
Affiliation created 1
Disease created 1
Publication created 1
EntityVertex created 1
NegativeGeneExpressionRegulation created 1
DatabaseObject created 1
NegativeRegulation created 1
GenomeEncodedEntity created 1
ConcurrentEventSet created 1
SimpleEntity created 1
BlackBoxEvent created 1
ReferenceMolecule created 1
CatalystActivity created 1
FragmentReplacedModification created 1
Polymerisation created 1
IntraChainCrosslinkedResidue created 1
DeletedControlledVocabulary created 1
PathwayDiagram created 1
InstanceEdit created 1
CrosslinkedResidue created 1
ControlledVocabulary created 1
EvidenceType created 1
ReferenceSequence created 1
EntityCompartment created 1
Edge created 1
_Deleted created 1
PathwayDiagramItem created 1
ReferenceGeneProduct created 1
ModifiedResidue created 1
Requirement created 1
EntityFunctionalStatus created 1
Person created 1
EntitySet created 1
LiteratureReference created 1
FailedReaction created 1
PositiveRegulation created 1
ReactionVertex created 1
SequenceOntology created 1
ExternalOntology created 1
GO_MolecularFunction created 1
_InstanceBeforeChange created 1
_Release created 1
Regulation created 1
GO_CellularComponent created 1
Summation created 1
Book created 1
URL created 1
FunctionalStatusType created 1
OpenSet created 1
ReferenceDNASequence created 1
ReferenceIsoform created 1
CandidateSet created 1
Figure created 1
Compartment created 1
FragmentModification created 1
Vertex created 1
ReactionlikeEvent created 1
Event created 1
_AttributeValueBeforeChange created 1
PathwayCoordinates created 1
AbstractModifiedResidue created 1
DatabaseIdentifier created 1
ReferenceGroup created 1
PsiMod created 1
Taxon created 1
TranslationalModification created 1
FragmentDeletionModification created 1
VertexSearchableTerm created 1
Depolymerisation created 1
Reaction created 1
OtherEntity created 1
GO_BiologicalProcess created 1
FragmentInsertionModification created 1
PhysicalEntity created 1
ReferenceRNASequence created 1
Polymer created 1
Pathway created 1
DefinedSet created 1
ReplacedResidue created 1
ReactionCoordinates created 1
Complex created 1
GroupModifiedResidue created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.