Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
DatabaseObject created 1
GO_BiologicalProcess created 1
Disease created 1
EntityVertex created 1
LiteratureReference created 1
Regulation created 1
FragmentInsertionModification created 1
FunctionalStatusType created 1
EntityCompartment created 1
PathwayCoordinates created 1
Polymer created 1
OpenSet created 1
EntitySet created 1
ReferenceMolecule created 1
_InstanceBeforeChange created 1
InstanceEdit created 1
Requirement created 1
GroupModifiedResidue created 1
ConcurrentEventSet created 1
PsiMod created 1
ModifiedResidue created 1
ExternalOntology created 1
Vertex created 1
ReferenceGroup created 1
Reaction created 1
CandidateSet created 1
StableIdentifier created 1
FragmentReplacedModification created 1
ControlledVocabulary created 1
URL created 1
ReplacedResidue created 1
Pathway created 1
DeletedControlledVocabulary created 1
FunctionalStatus created 1
PathwayDiagram created 1
Book created 1
Compartment created 1
ReferenceRNASequence created 1
GenomeEncodedEntity created 1
_Release created 1
_Deleted created 1
ReferenceIsoform created 1
Figure created 1
_AttributeValueBeforeChange created 1
Publication created 1
CatalystActivity created 1
CellType created 1
ReactionCoordinates created 1
FragmentDeletionModification created 1
InterChainCrosslinkedResidue created 1
ReferenceEntity created 1
ReferenceGeneProduct created 1
PhysicalEntity created 1
EntityFunctionalStatus created 1
Polymerisation created 1
ReactionlikeEvent created 1
GO_MolecularFunction created 1
ReferenceDNASequence created 1
EvidenceType created 1
IntraChainCrosslinkedResidue created 1
SequenceOntology created 1
DatabaseIdentifier created 1
CrosslinkedResidue created 1
TranslationalModification created 1
ReferenceDatabase created 1
FrontPage created 1
SimpleEntity created 1
Depolymerisation created 1
Taxon created 1
EntityWithAccessionedSequence created 1
GO_CellularComponent created 1
ReactionVertex created 1
Summation created 1
VertexSearchableTerm created 1
FragmentModification created 1
GeneticallyModifiedResidue created 1
ReferenceSequence created 1
Species created 1
OtherEntity created 1
Edge created 1
Complex created 1
FailedReaction created 1
NegativeRegulation created 1
DefinedSet created 1
Affiliation created 1
PositiveRegulation created 1
Person created 1
BlackBoxEvent created 1
Event created 1
AbstractModifiedResidue created 1
PathwayDiagramItem created 1
PathwayVertex created 1
PositiveRegulation reviewed +
BlackBoxEvent reviewed +
GenomeEncodedEntity reviewed +
NegativeRegulation reviewed +
DefinedSet reviewed +
Event reviewed +
Polymerisation reviewed +
ReactionlikeEvent reviewed +
OtherEntity reviewed +
Requirement reviewed +
Complex reviewed +
FailedReaction reviewed +
OpenSet reviewed +
Polymer reviewed +
PhysicalEntity reviewed +
EntitySet reviewed +
Pathway reviewed +
SimpleEntity reviewed +
Depolymerisation reviewed +
Reaction reviewed +
EntityWithAccessionedSequence reviewed +
Regulation reviewed +
CandidateSet reviewed +
Event authored +
GenomeEncodedEntity authored 1
BlackBoxEvent authored +
PositiveRegulation authored 1
DefinedSet authored 1
NegativeRegulation authored 1
Complex authored 1
FailedReaction authored +
Requirement authored 1
Polymerisation authored +
ReactionlikeEvent authored +
OtherEntity authored 1
PhysicalEntity authored 1
Pathway authored +
EntitySet authored 1
OpenSet authored 1
Polymer authored 1
EntityWithAccessionedSequence authored 1
CandidateSet authored 1
Regulation authored 1
Depolymerisation authored +
SimpleEntity authored 1
Reaction authored +
_InstanceBeforeChange instanceEdit 1
DefinedSet revised +
NegativeRegulation revised +
PositiveRegulation revised +
BlackBoxEvent revised +
GenomeEncodedEntity revised +
Event revised +
OtherEntity revised +
Polymerisation revised +
ReactionlikeEvent revised +
Requirement revised +
FailedReaction revised +
Complex revised +
Polymer revised +
OpenSet revised +
EntitySet revised +
Pathway revised +
PhysicalEntity revised +
Reaction revised +
Depolymerisation revised +
SimpleEntity revised +
CandidateSet revised +
Regulation revised +
EntityWithAccessionedSequence revised +
EntityWithAccessionedSequence edited +
Regulation edited +
CandidateSet edited +
Depolymerisation edited +
SimpleEntity edited +
Reaction edited +
PhysicalEntity edited +
Pathway edited +
EntitySet edited +
OpenSet edited +
Polymer edited +
FailedReaction edited +
Complex edited +
Requirement edited +
ReactionlikeEvent edited +
Polymerisation edited +
OtherEntity edited +
Event edited +
GenomeEncodedEntity edited +
BlackBoxEvent edited +
PositiveRegulation edited +
NegativeRegulation edited +
DefinedSet edited +
Regulation modified +
FragmentInsertionModification modified +
FunctionalStatusType modified +
DatabaseObject modified +
GO_BiologicalProcess modified +
Disease modified +
EntityVertex modified +
LiteratureReference modified +
ReferenceMolecule modified +
EntitySet modified +
Polymer modified +
EntityCompartment modified +
PathwayCoordinates modified +
OpenSet modified +
GroupModifiedResidue modified +
ConcurrentEventSet modified +
Requirement modified +
_InstanceBeforeChange modified +
InstanceEdit modified +
ExternalOntology modified +
Vertex modified +
ReferenceGroup modified +
PsiMod modified +
ModifiedResidue modified +
StableIdentifier modified +
CandidateSet modified +
FragmentReplacedModification modified +
Reaction modified +
Pathway modified +
ReplacedResidue modified +
URL modified +
DeletedControlledVocabulary modified +
ControlledVocabulary modified +
Compartment modified +
ReferenceRNASequence modified +
PathwayDiagram modified +
FunctionalStatus modified +
Book modified +
_Deleted modified +
_Release modified +
GenomeEncodedEntity modified +
_AttributeValueBeforeChange modified +
Publication modified +
ReferenceIsoform modified +
Figure modified +
ReferenceEntity modified +
InterChainCrosslinkedResidue modified +
PhysicalEntity modified +
ReferenceGeneProduct modified +
CellType modified +
ReactionCoordinates modified +
CatalystActivity modified +
FragmentDeletionModification modified +
IntraChainCrosslinkedResidue modified +
GO_MolecularFunction modified +
ReferenceDNASequence modified +
EvidenceType modified +
SequenceOntology modified +
EntityFunctionalStatus modified +
ReactionlikeEvent modified +
Polymerisation modified +
ReferenceDatabase modified +
TranslationalModification modified +
CrosslinkedResidue modified +
DatabaseIdentifier modified +
Taxon modified +
EntityWithAccessionedSequence modified +
FrontPage modified +
Depolymerisation modified +
SimpleEntity modified +
GeneticallyModifiedResidue modified +
FragmentModification modified +
ReferenceSequence modified +
Species modified +
GO_CellularComponent modified +
Summation modified +
VertexSearchableTerm modified +
ReactionVertex modified +
FailedReaction modified +
Complex modified +
OtherEntity modified +
Edge modified +
AbstractModifiedResidue modified +
PathwayDiagramItem modified +
Event modified +
PathwayVertex modified +
DefinedSet modified +
NegativeRegulation modified +
Affiliation modified +
BlackBoxEvent modified +
Person modified +
PositiveRegulation modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.