Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
ReactionlikeEvent edited +
Event edited +
GenomeEncodedEntity edited +
PhysicalEntity edited +
Regulation edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
EntityWithAccessionedSequence edited +
Polymerisation edited +
FailedReaction edited +
Requirement edited +
EntitySet edited +
BlackBoxEvent edited +
CandidateSet edited +
NegativeRegulation edited +
PositiveRegulation edited +
PositiveGeneExpressionRegulation edited +
Polymer edited +
SimpleEntity edited +
Reaction edited +
OtherEntity edited +
OpenSet edited +
Complex edited +
DefinedSet edited +
Depolymerisation edited +
NegativeRegulation reviewed +
CandidateSet reviewed +
BlackBoxEvent reviewed +
EntitySet reviewed +
FailedReaction reviewed +
Polymerisation reviewed +
Requirement reviewed +
NegativeGeneExpressionRegulation reviewed +
Pathway reviewed +
EntityWithAccessionedSequence reviewed +
Event reviewed +
ReactionlikeEvent reviewed +
GenomeEncodedEntity reviewed +
PhysicalEntity reviewed +
Regulation reviewed +
Depolymerisation reviewed +
DefinedSet reviewed +
Complex reviewed +
OpenSet reviewed +
Reaction reviewed +
OtherEntity reviewed +
Polymer reviewed +
SimpleEntity reviewed +
PositiveRegulation reviewed +
PositiveGeneExpressionRegulation reviewed +
DefinedSet authored 1
Complex authored 1
Depolymerisation authored +
PositiveRegulation authored 1
PositiveGeneExpressionRegulation authored 1
Polymer authored 1
SimpleEntity authored 1
OtherEntity authored 1
Reaction authored +
OpenSet authored 1
EntitySet authored 1
BlackBoxEvent authored +
CandidateSet authored 1
NegativeRegulation authored 1
GenomeEncodedEntity authored 1
Event authored +
ReactionlikeEvent authored +
PhysicalEntity authored 1
Regulation authored 1
NegativeGeneExpressionRegulation authored 1
Pathway authored +
EntityWithAccessionedSequence authored 1
Polymerisation authored +
FailedReaction authored +
Requirement authored 1
OpenSet revised +
Reaction revised +
OtherEntity revised +
Polymer revised +
SimpleEntity revised +
PositiveRegulation revised +
PositiveGeneExpressionRegulation revised +
Depolymerisation revised +
Complex revised +
DefinedSet revised +
FailedReaction revised +
Polymerisation revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
Pathway revised +
EntityWithAccessionedSequence revised +
ReactionlikeEvent revised +
GenomeEncodedEntity revised +
Event revised +
PhysicalEntity revised +
Regulation revised +
NegativeRegulation revised +
CandidateSet revised +
BlackBoxEvent revised +
EntitySet revised +
_InstanceBeforeChange instanceEdit 1
ReferenceDNASequence created 1
Pathway created 1
InstanceEdit created 1
ReactionlikeEvent created 1
Event created 1
PhysicalEntity created 1
FragmentReplacedModification created 1
ControlledVocabulary created 1
CandidateSet created 1
ReactionCoordinates created 1
DatabaseObject created 1
InterChainCrosslinkedResidue created 1
Reaction created 1
DatabaseIdentifier created 1
OpenSet created 1
_InstanceBeforeChange created 1
Affiliation created 1
ModifiedResidue created 1
ReferenceRNASequence created 1
TranslationalModification created 1
ReferenceIsoform created 1
StableIdentifier created 1
ReferenceEntity created 1
SequenceOntology created 1
DeletedControlledVocabulary created 1
PsiMod created 1
_Release created 1
PathwayCoordinates created 1
ReplacedResidue created 1
GenomeEncodedEntity created 1
LiteratureReference created 1
CellType created 1
Taxon created 1
Person created 1
_Deleted created 1
Species created 1
GeneticallyModifiedResidue created 1
AbstractModifiedResidue created 1
CatalystActivity created 1
URL created 1
PositiveGeneExpressionRegulation created 1
Polymer created 1
GroupModifiedResidue created 1
ReferenceDatabase created 1
ReferenceGroup created 1
CrosslinkedResidue created 1
Summation created 1
GO_CellularComponent created 1
EntityCompartment created 1
EntityWithAccessionedSequence created 1
FragmentModification created 1
VertexSearchableTerm created 1
ReferenceMolecule created 1
Polymerisation created 1
ExternalOntology created 1
IntraChainCrosslinkedResidue created 1
Book created 1
Regulation created 1
FunctionalStatus created 1
Publication created 1
EntityFunctionalStatus created 1
ReferenceSequence created 1
EntityVertex created 1
FrontPage created 1
SimpleEntity created 1
Figure created 1
Complex created 1
Depolymerisation created 1
ConcurrentEventSet created 1
GO_BiologicalProcess created 1
GO_MolecularFunction created 1
NegativeGeneExpressionRegulation created 1
ReferenceGeneProduct created 1
FailedReaction created 1
Requirement created 1
PathwayDiagramItem created 1
Vertex created 1
EvidenceType created 1
FragmentDeletionModification created 1
PathwayDiagram created 1
NegativeRegulation created 1
EntitySet created 1
BlackBoxEvent created 1
_AttributeValueBeforeChange created 1
OtherEntity created 1
Disease created 1
PositiveRegulation created 1
ReactionVertex created 1
Compartment created 1
DefinedSet created 1
FragmentInsertionModification created 1
PathwayVertex created 1
Edge created 1
FunctionalStatusType created 1
EntitySet modified +
BlackBoxEvent modified +
_AttributeValueBeforeChange modified +
PathwayDiagram modified +
NegativeRegulation modified +
PathwayDiagramItem modified +
Vertex modified +
EvidenceType modified +
FragmentDeletionModification modified +
GO_MolecularFunction modified +
NegativeGeneExpressionRegulation modified +
ReferenceGeneProduct modified +
FailedReaction modified +
Requirement modified +
PathwayVertex modified +
Edge modified +
FunctionalStatusType modified +
Compartment modified +
DefinedSet modified +
FragmentInsertionModification modified +
PositiveRegulation modified +
ReactionVertex modified +
OtherEntity modified +
Disease modified +
EntityFunctionalStatus modified +
FunctionalStatus modified +
Publication modified +
IntraChainCrosslinkedResidue modified +
Book modified +
Regulation modified +
EntityWithAccessionedSequence modified +
ReferenceMolecule modified +
FragmentModification modified +
Polymerisation modified +
ExternalOntology modified +
VertexSearchableTerm modified +
GO_BiologicalProcess modified +
Complex modified +
Figure modified +
ConcurrentEventSet modified +
Depolymerisation modified +
FrontPage modified +
SimpleEntity modified +
ReferenceSequence modified +
EntityVertex modified +
_Deleted modified +
Species modified +
AbstractModifiedResidue modified +
GeneticallyModifiedResidue modified +
LiteratureReference modified +
CellType modified +
Taxon modified +
Person modified +
PathwayCoordinates modified +
ReplacedResidue modified +
GenomeEncodedEntity modified +
PsiMod modified +
_Release modified +
Summation modified +
GO_CellularComponent modified +
EntityCompartment modified +
ReferenceDatabase modified +
ReferenceGroup modified +
CrosslinkedResidue modified +
PositiveGeneExpressionRegulation modified +
Polymer modified +
GroupModifiedResidue modified +
CatalystActivity modified +
URL modified +
DatabaseObject modified +
InterChainCrosslinkedResidue modified +
FragmentReplacedModification modified +
ControlledVocabulary modified +
ReactionCoordinates modified +
CandidateSet modified +
ReactionlikeEvent modified +
Event modified +
PhysicalEntity modified +
ReferenceDNASequence modified +
Pathway modified +
InstanceEdit modified +
ReferenceEntity modified +
SequenceOntology modified +
DeletedControlledVocabulary modified +
ReferenceIsoform modified +
StableIdentifier modified +
Affiliation modified +
ModifiedResidue modified +
ReferenceRNASequence modified +
TranslationalModification modified +
Reaction modified +
DatabaseIdentifier modified +
OpenSet modified +
_InstanceBeforeChange modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.