Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
GenomeEncodedEntity revised +
SimpleEntity revised +
EntityWithAccessionedSequence revised +
Depolymerisation revised +
EntitySet revised +
PhysicalEntity revised +
CandidateSet revised +
ReactionlikeEvent revised +
OtherEntity revised +
DefinedSet revised +
NegativeRegulation revised +
Polymer revised +
PositiveRegulation revised +
Regulation revised +
BlackBoxEvent revised +
OpenSet revised +
Pathway revised +
Polymerisation revised +
Reaction revised +
Complex revised +
Requirement revised +
FailedReaction revised +
Event revised +
GeneticallyModifiedResidue created 1
EntityVertex created 1
ReactionVertex created 1
Species created 1
Summation created 1
Depolymerisation created 1
SimpleEntity created 1
DeletedControlledVocabulary created 1
_AttributeValueBeforeChange created 1
ControlledVocabulary created 1
ExternalOntology created 1
ReactionlikeEvent created 1
Compartment created 1
Regulation created 1
ReferenceIsoform created 1
FrontPage created 1
DefinedSet created 1
Polymer created 1
GO_MolecularFunction created 1
Requirement created 1
_Deleted created 1
GO_CellularComponent created 1
PsiMod created 1
Event created 1
URL created 1
InterChainCrosslinkedResidue created 1
LiteratureReference created 1
EntitySet created 1
VertexSearchableTerm created 1
EvidenceType created 1
Book created 1
GO_BiologicalProcess created 1
PhysicalEntity created 1
Person created 1
CandidateSet created 1
Affiliation created 1
InstanceEdit created 1
DatabaseObject created 1
FunctionalStatusType created 1
ConcurrentEventSet created 1
PositiveRegulation created 1
ReferenceEntity created 1
IntraChainCrosslinkedResidue created 1
PathwayDiagram created 1
ReferenceGeneProduct created 1
FragmentInsertionModification created 1
FragmentModification created 1
Edge created 1
SequenceOntology created 1
CrosslinkedResidue created 1
CellType created 1
ReactionCoordinates created 1
_Release created 1
TranslationalModification created 1
GroupModifiedResidue created 1
ReferenceMolecule created 1
ReplacedResidue created 1
Publication created 1
PathwayDiagramItem created 1
EntityFunctionalStatus created 1
OtherEntity created 1
DatabaseIdentifier created 1
Disease created 1
ModifiedResidue created 1
Complex created 1
FragmentDeletionModification created 1
Pathway created 1
ReferenceDatabase created 1
ReferenceGroup created 1
PathwayVertex created 1
ReferenceRNASequence created 1
GenomeEncodedEntity created 1
EntityWithAccessionedSequence created 1
Taxon created 1
FunctionalStatus created 1
Figure created 1
FragmentReplacedModification created 1
ReferenceSequence created 1
StableIdentifier created 1
_InstanceBeforeChange created 1
EntityCompartment created 1
CatalystActivity created 1
BlackBoxEvent created 1
PathwayCoordinates created 1
NegativeRegulation created 1
FailedReaction created 1
Vertex created 1
OpenSet created 1
AbstractModifiedResidue created 1
Polymerisation created 1
Reaction created 1
ReferenceDNASequence created 1
GenomeEncodedEntity authored 1
SimpleEntity authored 1
EntityWithAccessionedSequence authored 1
EntitySet authored 1
Depolymerisation authored +
PhysicalEntity authored 1
CandidateSet authored 1
ReactionlikeEvent authored +
DefinedSet authored 1
OtherEntity authored 1
Polymer authored 1
PositiveRegulation authored 1
NegativeRegulation authored 1
Regulation authored 1
BlackBoxEvent authored +
Pathway authored +
Polymerisation authored +
Reaction authored +
OpenSet authored 1
FailedReaction authored +
Requirement authored 1
Complex authored 1
Event authored +
Depolymerisation edited +
EntitySet edited +
EntityWithAccessionedSequence edited +
GenomeEncodedEntity edited +
SimpleEntity edited +
CandidateSet edited +
ReactionlikeEvent edited +
PhysicalEntity edited +
BlackBoxEvent edited +
Regulation edited +
NegativeRegulation edited +
Polymer edited +
PositiveRegulation edited +
OtherEntity edited +
DefinedSet edited +
Event edited +
Complex edited +
Requirement edited +
FailedReaction edited +
OpenSet edited +
Reaction edited +
Polymerisation edited +
Pathway edited +
DefinedSet modified +
FrontPage modified +
Polymer modified +
Regulation modified +
Compartment modified +
ReferenceIsoform modified +
URL modified +
Requirement modified +
GO_MolecularFunction modified +
_Deleted modified +
GO_CellularComponent modified +
PsiMod modified +
Event modified +
SimpleEntity modified +
DeletedControlledVocabulary modified +
GeneticallyModifiedResidue modified +
EntityVertex modified +
ReactionVertex modified +
Summation modified +
Species modified +
Depolymerisation modified +
ReactionlikeEvent modified +
ControlledVocabulary modified +
_AttributeValueBeforeChange modified +
ExternalOntology modified +
FunctionalStatusType modified +
ConcurrentEventSet modified +
ReferenceEntity modified +
PositiveRegulation modified +
DatabaseObject modified +
FragmentInsertionModification modified +
FragmentModification modified +
Edge modified +
SequenceOntology modified +
PathwayDiagram modified +
IntraChainCrosslinkedResidue modified +
ReferenceGeneProduct modified +
InterChainCrosslinkedResidue modified +
LiteratureReference modified +
EntitySet modified +
VertexSearchableTerm modified +
GO_BiologicalProcess modified +
PhysicalEntity modified +
Person modified +
CandidateSet modified +
Affiliation modified +
InstanceEdit modified +
EvidenceType modified +
Book modified +
OtherEntity modified +
DatabaseIdentifier modified +
Disease modified +
Publication modified +
PathwayDiagramItem modified +
EntityFunctionalStatus modified +
ReferenceDatabase modified +
Pathway modified +
ReferenceGroup modified +
ModifiedResidue modified +
Complex modified +
FragmentDeletionModification modified +
CellType modified +
ReactionCoordinates modified +
_Release modified +
CrosslinkedResidue modified +
ReplacedResidue modified +
TranslationalModification modified +
GroupModifiedResidue modified +
ReferenceMolecule modified +
PathwayCoordinates modified +
NegativeRegulation modified +
EntityCompartment modified +
_InstanceBeforeChange modified +
CatalystActivity modified +
BlackBoxEvent modified +
OpenSet modified +
AbstractModifiedResidue modified +
Reaction modified +
Polymerisation modified +
ReferenceDNASequence modified +
FailedReaction modified +
Vertex modified +
GenomeEncodedEntity modified +
EntityWithAccessionedSequence modified +
PathwayVertex modified +
ReferenceRNASequence modified +
ReferenceSequence modified +
StableIdentifier modified +
FunctionalStatus modified +
Taxon modified +
Figure modified +
FragmentReplacedModification modified +
Depolymerisation reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence reviewed +
GenomeEncodedEntity reviewed +
SimpleEntity reviewed +
ReactionlikeEvent reviewed +
CandidateSet reviewed +
PhysicalEntity reviewed +
BlackBoxEvent reviewed +
Regulation reviewed +
NegativeRegulation reviewed +
Polymer reviewed +
PositiveRegulation reviewed +
OtherEntity reviewed +
DefinedSet reviewed +
Event reviewed +
Requirement reviewed +
Complex reviewed +
FailedReaction reviewed +
OpenSet reviewed +
Pathway reviewed +
Polymerisation reviewed +
Reaction reviewed +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.