Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Polymer reviewed +
Requirement reviewed +
GenomeEncodedEntity reviewed +
OpenSet reviewed +
PositiveGeneExpressionRegulation reviewed +
SimpleEntity reviewed +
Regulation reviewed +
Event reviewed +
CandidateSet reviewed +
ReactionlikeEvent reviewed +
Polymerisation reviewed +
FailedReaction reviewed +
NegativeRegulation reviewed +
EntityWithAccessionedSequence reviewed +
Depolymerisation reviewed +
NegativeGeneExpressionRegulation reviewed +
Reaction reviewed +
DefinedSet reviewed +
PhysicalEntity reviewed +
OtherEntity reviewed +
PositiveRegulation reviewed +
EntitySet reviewed +
Pathway reviewed +
Complex reviewed +
BlackBoxEvent reviewed +
BlackBoxEvent authored +
Complex authored 1
Pathway authored +
EntitySet authored 1
PositiveRegulation authored 1
OtherEntity authored 1
PhysicalEntity authored 1
DefinedSet authored 1
Reaction authored +
NegativeGeneExpressionRegulation authored 1
Depolymerisation authored +
EntityWithAccessionedSequence authored 1
NegativeRegulation authored 1
ReactionlikeEvent authored +
FailedReaction authored +
Polymerisation authored +
CandidateSet authored 1
Event authored +
Regulation authored 1
SimpleEntity authored 1
PositiveGeneExpressionRegulation authored 1
OpenSet authored 1
GenomeEncodedEntity authored 1
Polymer authored 1
Requirement authored 1
ReferenceEntity modified +
_InstanceBeforeChange modified +
ReactionVertex modified +
GO_CellularComponent modified +
GenomeEncodedEntity modified +
PathwayVertex modified +
CrosslinkedResidue modified +
FailedReaction modified +
CandidateSet modified +
GO_MolecularFunction modified +
ReactionCoordinates modified +
OtherEntity modified +
CellType modified +
Book modified +
Reaction modified +
EntityWithAccessionedSequence modified +
ReferenceGeneProduct modified +
Depolymerisation modified +
FunctionalStatus modified +
GroupModifiedResidue modified +
ReplacedResidue modified +
ModifiedResidue modified +
_AttributeValueBeforeChange modified +
Species modified +
ReferenceMolecule modified +
EntitySet modified +
Person modified +
Figure modified +
FragmentReplacedModification modified +
ControlledVocabulary modified +
FunctionalStatusType modified +
ReferenceGroup modified +
PositiveGeneExpressionRegulation modified +
TranslationalModification modified +
FragmentDeletionModification modified +
ReferenceRNASequence modified +
Polymerisation modified +
_Deleted modified +
InterChainCrosslinkedResidue modified +
PathwayDiagram modified +
DatabaseObject modified +
PositiveRegulation modified +
StableIdentifier modified +
FragmentInsertionModification modified +
ReferenceDNASequence modified +
Disease modified +
DefinedSet modified +
ConcurrentEventSet modified +
LiteratureReference modified +
PsiMod modified +
FragmentModification modified +
Complex modified +
IntraChainCrosslinkedResidue modified +
Publication modified +
FrontPage modified +
InstanceEdit modified +
ReferenceDatabase modified +
EntityFunctionalStatus modified +
OpenSet modified +
EntityCompartment modified +
Taxon modified +
AbstractModifiedResidue modified +
Vertex modified +
Requirement modified +
EntityVertex modified +
VertexSearchableTerm modified +
Event modified +
SequenceOntology modified +
Summation modified +
SimpleEntity modified +
Affiliation modified +
PathwayDiagramItem modified +
Compartment modified +
PhysicalEntity modified +
URL modified +
NegativeGeneExpressionRegulation modified +
BlackBoxEvent modified +
Pathway modified +
DeletedControlledVocabulary modified +
EvidenceType modified +
Polymer modified +
NegativeRegulation modified +
Edge modified +
ReferenceSequence modified +
GO_BiologicalProcess modified +
ReactionlikeEvent modified +
GeneticallyModifiedResidue modified +
_Release modified +
Regulation modified +
DatabaseIdentifier modified +
CatalystActivity modified +
PathwayCoordinates modified +
ReferenceIsoform modified +
ExternalOntology modified +
EntitySet created 1
Person created 1
Figure created 1
Species created 1
ReferenceMolecule created 1
_AttributeValueBeforeChange created 1
GroupModifiedResidue created 1
ReplacedResidue created 1
ModifiedResidue created 1
EntityWithAccessionedSequence created 1
Depolymerisation created 1
ReferenceGeneProduct created 1
FunctionalStatus created 1
Book created 1
Reaction created 1
OtherEntity created 1
CellType created 1
ReactionCoordinates created 1
GO_MolecularFunction created 1
CandidateSet created 1
CrosslinkedResidue created 1
FailedReaction created 1
PathwayVertex created 1
GenomeEncodedEntity created 1
_InstanceBeforeChange created 1
ReactionVertex created 1
GO_CellularComponent created 1
ReferenceEntity created 1
Publication created 1
IntraChainCrosslinkedResidue created 1
Complex created 1
PsiMod created 1
FragmentModification created 1
LiteratureReference created 1
ConcurrentEventSet created 1
Disease created 1
DefinedSet created 1
ReferenceDNASequence created 1
StableIdentifier created 1
PositiveRegulation created 1
PathwayDiagram created 1
DatabaseObject created 1
FragmentInsertionModification created 1
InterChainCrosslinkedResidue created 1
_Deleted created 1
Polymerisation created 1
ReferenceRNASequence created 1
TranslationalModification created 1
FragmentDeletionModification created 1
ControlledVocabulary created 1
PositiveGeneExpressionRegulation created 1
ReferenceGroup created 1
FunctionalStatusType created 1
FragmentReplacedModification created 1
DeletedControlledVocabulary created 1
Pathway created 1
BlackBoxEvent created 1
URL created 1
NegativeGeneExpressionRegulation created 1
Compartment created 1
PhysicalEntity created 1
Affiliation created 1
PathwayDiagramItem created 1
Summation created 1
SequenceOntology created 1
SimpleEntity created 1
Event created 1
VertexSearchableTerm created 1
EntityVertex created 1
Taxon created 1
AbstractModifiedResidue created 1
Vertex created 1
Requirement created 1
EntityCompartment created 1
EntityFunctionalStatus created 1
OpenSet created 1
ReferenceDatabase created 1
FrontPage created 1
InstanceEdit created 1
ExternalOntology created 1
ReferenceIsoform created 1
PathwayCoordinates created 1
DatabaseIdentifier created 1
CatalystActivity created 1
Regulation created 1
_Release created 1
GeneticallyModifiedResidue created 1
Edge created 1
ReferenceSequence created 1
GO_BiologicalProcess created 1
ReactionlikeEvent created 1
NegativeRegulation created 1
Polymer created 1
EvidenceType created 1
_InstanceBeforeChange instanceEdit 1
PositiveRegulation edited +
OtherEntity edited +
PhysicalEntity edited +
Reaction edited +
DefinedSet edited +
NegativeGeneExpressionRegulation edited +
Depolymerisation edited +
EntityWithAccessionedSequence edited +
BlackBoxEvent edited +
Pathway edited +
Complex edited +
EntitySet edited +
PositiveGeneExpressionRegulation edited +
OpenSet edited +
GenomeEncodedEntity edited +
Requirement edited +
Polymer edited +
NegativeRegulation edited +
ReactionlikeEvent edited +
Polymerisation edited +
FailedReaction edited +
Event edited +
CandidateSet edited +
Regulation edited +
SimpleEntity edited +
OpenSet revised +
PositiveGeneExpressionRegulation revised +
GenomeEncodedEntity revised +
Requirement revised +
Polymer revised +
NegativeRegulation revised +
Polymerisation revised +
ReactionlikeEvent revised +
FailedReaction revised +
Event revised +
CandidateSet revised +
SimpleEntity revised +
Regulation revised +
PositiveRegulation revised +
OtherEntity revised +
PhysicalEntity revised +
Reaction revised +
DefinedSet revised +
EntityWithAccessionedSequence revised +
Depolymerisation revised +
NegativeGeneExpressionRegulation revised +
BlackBoxEvent revised +
Pathway revised +
Complex revised +
EntitySet revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.