Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
EntityWithAccessionedSequence reviewed +
Depolymerisation reviewed +
NegativeRegulation reviewed +
Polymerisation reviewed +
OpenSet reviewed +
Pathway reviewed +
Event reviewed +
Polymer reviewed +
Complex reviewed +
Requirement reviewed +
BlackBoxEvent reviewed +
Regulation reviewed +
GenomeEncodedEntity reviewed +
ReactionlikeEvent reviewed +
CandidateSet reviewed +
EntitySet reviewed +
FailedReaction reviewed +
DefinedSet reviewed +
PhysicalEntity reviewed +
NegativeGeneExpressionRegulation reviewed +
SimpleEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
PositiveRegulation reviewed +
Reaction reviewed +
OtherEntity reviewed +
PsiMod modified +
Regulation modified +
BlackBoxEvent modified +
FrontPage modified +
InterChainCrosslinkedResidue modified +
EvidenceType modified +
EntityFunctionalStatus modified +
ReferenceEntity modified +
Summation modified +
StableIdentifier modified +
GO_BiologicalProcess modified +
EntityVertex modified +
Polymerisation modified +
Depolymerisation modified +
TranslationalModification modified +
_AttributeValueBeforeChange modified +
URL modified +
Species modified +
Figure modified +
SimpleEntity modified +
_InstanceBeforeChange modified +
CandidateSet modified +
ReactionlikeEvent modified +
EntitySet modified +
FailedReaction modified +
Compartment modified +
Polymer modified +
PathwayCoordinates modified +
CrosslinkedResidue modified +
OpenSet modified +
NegativeRegulation modified +
ReferenceIsoform modified +
ConcurrentEventSet modified +
Edge modified +
ReactionCoordinates modified +
Disease modified +
SequenceOntology modified +
PhysicalEntity modified +
GO_CellularComponent modified +
DeletedControlledVocabulary modified +
GO_MolecularFunction modified +
_Release modified +
DefinedSet modified +
ReferenceGroup modified +
Book modified +
Complex modified +
Publication modified +
Event modified +
Affiliation modified +
CellType modified +
GroupModifiedResidue modified +
VertexSearchableTerm modified +
ControlledVocabulary modified +
DatabaseObject modified +
_Deleted modified +
Pathway modified +
Taxon modified +
EntityWithAccessionedSequence modified +
InstanceEdit modified +
FragmentInsertionModification modified +
ReferenceGeneProduct modified +
PathwayDiagram modified +
PositiveRegulation modified +
EntityCompartment modified +
ExternalOntology modified +
FunctionalStatusType modified +
NegativeGeneExpressionRegulation modified +
PositiveGeneExpressionRegulation modified +
FragmentModification modified +
ReferenceMolecule modified +
LiteratureReference modified +
FragmentReplacedModification modified +
ReferenceSequence modified +
GenomeEncodedEntity modified +
Vertex modified +
CatalystActivity modified +
ReferenceDatabase modified +
ReactionVertex modified +
Person modified +
Requirement modified +
FragmentDeletionModification modified +
DatabaseIdentifier modified +
AbstractModifiedResidue modified +
ModifiedResidue modified +
ReferenceDNASequence modified +
OtherEntity modified +
PathwayDiagramItem modified +
Reaction modified +
ReplacedResidue modified +
IntraChainCrosslinkedResidue modified +
PathwayVertex modified +
GeneticallyModifiedResidue modified +
ReferenceRNASequence modified +
FunctionalStatus modified +
OtherEntity edited +
Reaction edited +
NegativeGeneExpressionRegulation edited +
SimpleEntity edited +
PositiveGeneExpressionRegulation edited +
PositiveRegulation edited +
CandidateSet edited +
EntitySet edited +
ReactionlikeEvent edited +
DefinedSet edited +
FailedReaction edited +
PhysicalEntity edited +
Regulation edited +
BlackBoxEvent edited +
GenomeEncodedEntity edited +
Event edited +
Polymer edited +
Complex edited +
Requirement edited +
OpenSet edited +
Pathway edited +
EntityWithAccessionedSequence edited +
Depolymerisation edited +
NegativeRegulation edited +
Polymerisation edited +
OtherEntity authored 1
Reaction authored +
PositiveGeneExpressionRegulation authored 1
SimpleEntity authored 1
NegativeGeneExpressionRegulation authored 1
PositiveRegulation authored 1
FailedReaction authored +
DefinedSet authored 1
CandidateSet authored 1
EntitySet authored 1
ReactionlikeEvent authored +
PhysicalEntity authored 1
BlackBoxEvent authored +
Regulation authored 1
GenomeEncodedEntity authored 1
Polymer authored 1
Event authored +
Requirement authored 1
Complex authored 1
Pathway authored +
OpenSet authored 1
Depolymerisation authored +
EntityWithAccessionedSequence authored 1
Polymerisation authored +
NegativeRegulation authored 1
OpenSet revised +
Pathway revised +
Depolymerisation revised +
EntityWithAccessionedSequence revised +
NegativeRegulation revised +
Polymerisation revised +
BlackBoxEvent revised +
Regulation revised +
GenomeEncodedEntity revised +
Event revised +
Polymer revised +
Complex revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
SimpleEntity revised +
PositiveGeneExpressionRegulation revised +
PositiveRegulation revised +
CandidateSet revised +
EntitySet revised +
ReactionlikeEvent revised +
FailedReaction revised +
DefinedSet revised +
PhysicalEntity revised +
OtherEntity revised +
Reaction revised +
Depolymerisation created 1
GO_BiologicalProcess created 1
Polymerisation created 1
EntityVertex created 1
ReferenceEntity created 1
Summation created 1
StableIdentifier created 1
InterChainCrosslinkedResidue created 1
EvidenceType created 1
EntityFunctionalStatus created 1
FrontPage created 1
PsiMod created 1
BlackBoxEvent created 1
Regulation created 1
EntitySet created 1
CandidateSet created 1
ReactionlikeEvent created 1
FailedReaction created 1
_InstanceBeforeChange created 1
SimpleEntity created 1
Figure created 1
Species created 1
_AttributeValueBeforeChange created 1
TranslationalModification created 1
URL created 1
ConcurrentEventSet created 1
ReferenceIsoform created 1
NegativeRegulation created 1
OpenSet created 1
CrosslinkedResidue created 1
PathwayCoordinates created 1
Polymer created 1
Compartment created 1
_Release created 1
DeletedControlledVocabulary created 1
GO_MolecularFunction created 1
DefinedSet created 1
GO_CellularComponent created 1
PhysicalEntity created 1
SequenceOntology created 1
Disease created 1
ReactionCoordinates created 1
Edge created 1
EntityWithAccessionedSequence created 1
Taxon created 1
_Deleted created 1
Pathway created 1
DatabaseObject created 1
VertexSearchableTerm created 1
ControlledVocabulary created 1
Event created 1
Affiliation created 1
GroupModifiedResidue created 1
CellType created 1
Complex created 1
Publication created 1
Book created 1
ReferenceGroup created 1
ReferenceMolecule created 1
FragmentModification created 1
NegativeGeneExpressionRegulation created 1
PositiveGeneExpressionRegulation created 1
EntityCompartment created 1
PositiveRegulation created 1
ExternalOntology created 1
FunctionalStatusType created 1
ReferenceGeneProduct created 1
FragmentInsertionModification created 1
PathwayDiagram created 1
InstanceEdit created 1
ModifiedResidue created 1
AbstractModifiedResidue created 1
ReferenceDNASequence created 1
FragmentDeletionModification created 1
DatabaseIdentifier created 1
Person created 1
Requirement created 1
ReactionVertex created 1
CatalystActivity created 1
ReferenceDatabase created 1
Vertex created 1
FragmentReplacedModification created 1
LiteratureReference created 1
GenomeEncodedEntity created 1
ReferenceSequence created 1
GeneticallyModifiedResidue created 1
FunctionalStatus created 1
ReferenceRNASequence created 1
PathwayVertex created 1
Reaction created 1
ReplacedResidue created 1
IntraChainCrosslinkedResidue created 1
PathwayDiagramItem created 1
OtherEntity created 1
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.