Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
Depolymerisation revised +
Polymerisation revised +
PositiveRegulation revised +
PhysicalEntity revised +
Polymer revised +
GenomeEncodedEntity revised +
OtherEntity revised +
EntityWithAccessionedSequence revised +
Regulation revised +
DefinedSet revised +
Event revised +
CandidateSet revised +
OpenSet revised +
Pathway revised +
SimpleEntity revised +
BlackBoxEvent revised +
Reaction revised +
ReactionlikeEvent revised +
Complex revised +
Requirement revised +
NegativeRegulation revised +
EntitySet revised +
FailedReaction revised +
PhysicalEntity reviewed +
PositiveRegulation reviewed +
Depolymerisation reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
Regulation reviewed +
EntityWithAccessionedSequence reviewed +
GenomeEncodedEntity reviewed +
OtherEntity reviewed +
Polymer reviewed +
BlackBoxEvent reviewed +
SimpleEntity reviewed +
Pathway reviewed +
OpenSet reviewed +
CandidateSet reviewed +
Event reviewed +
NegativeRegulation reviewed +
EntitySet reviewed +
FailedReaction reviewed +
Requirement reviewed +
Complex reviewed +
ReactionlikeEvent reviewed +
Reaction reviewed +
FrontPage created 1
FunctionalStatus created 1
SimpleEntity created 1
Publication created 1
_Release created 1
Event created 1
CrosslinkedResidue created 1
FailedReaction created 1
EntitySet created 1
ModifiedResidue created 1
InterChainCrosslinkedResidue created 1
Complex created 1
FragmentDeletionModification created 1
PathwayVertex created 1
ReactionlikeEvent created 1
ReferenceDatabase created 1
GO_MolecularFunction created 1
ReactionVertex created 1
InstanceEdit created 1
ReferenceGroup created 1
Edge created 1
DatabaseObject created 1
Regulation created 1
Vertex created 1
Polymer created 1
OtherEntity created 1
_AttributeValueBeforeChange created 1
_InstanceBeforeChange created 1
AbstractModifiedResidue created 1
BlackBoxEvent created 1
VertexSearchableTerm created 1
LiteratureReference created 1
FragmentModification created 1
GroupModifiedResidue created 1
ConcurrentEventSet created 1
ReferenceDNASequence created 1
Figure created 1
Reaction created 1
Species created 1
DatabaseIdentifier created 1
IntraChainCrosslinkedResidue created 1
Requirement created 1
SequenceOntology created 1
PathwayDiagram created 1
Polymerisation created 1
ReferenceIsoform created 1
PhysicalEntity created 1
GO_BiologicalProcess created 1
GO_CellularComponent created 1
EntityWithAccessionedSequence created 1
CatalystActivity created 1
ReplacedResidue created 1
PathwayCoordinates created 1
EntityVertex created 1
DefinedSet created 1
ReactionCoordinates created 1
Summation created 1
GeneticallyModifiedResidue created 1
ReferenceGeneProduct created 1
OpenSet created 1
Pathway created 1
StableIdentifier created 1
ReferenceEntity created 1
NegativeRegulation created 1
ReferenceRNASequence created 1
Compartment created 1
FunctionalStatusType created 1
GenomeEncodedEntity created 1
Disease created 1
FragmentReplacedModification created 1
CandidateSet created 1
DeletedControlledVocabulary created 1
EntityCompartment created 1
FragmentInsertionModification created 1
EntityFunctionalStatus created 1
_Deleted created 1
Person created 1
Affiliation created 1
ExternalOntology created 1
TranslationalModification created 1
PositiveRegulation created 1
ReferenceSequence created 1
URL created 1
Depolymerisation created 1
ReferenceMolecule created 1
EvidenceType created 1
Taxon created 1
Book created 1
CellType created 1
PsiMod created 1
PathwayDiagramItem created 1
ControlledVocabulary created 1
PositiveRegulation edited +
Polymerisation edited +
Depolymerisation edited +
PhysicalEntity edited +
Regulation edited +
EntityWithAccessionedSequence edited +
DefinedSet edited +
Polymer edited +
GenomeEncodedEntity edited +
OtherEntity edited +
SimpleEntity edited +
BlackBoxEvent edited +
Event edited +
CandidateSet edited +
OpenSet edited +
Pathway edited +
FailedReaction edited +
NegativeRegulation edited +
EntitySet edited +
Complex edited +
Reaction edited +
ReactionlikeEvent edited +
Requirement edited +
OtherEntity authored 1
GenomeEncodedEntity authored 1
Polymer authored 1
DefinedSet authored 1
Regulation authored 1
EntityWithAccessionedSequence authored 1
PhysicalEntity authored 1
PositiveRegulation authored 1
Polymerisation authored +
Depolymerisation authored +
Requirement authored 1
Complex authored 1
Reaction authored +
ReactionlikeEvent authored +
FailedReaction authored +
NegativeRegulation authored 1
EntitySet authored 1
Pathway authored +
CandidateSet authored 1
Event authored +
OpenSet authored 1
BlackBoxEvent authored +
SimpleEntity authored 1
InterChainCrosslinkedResidue modified +
ModifiedResidue modified +
EntitySet modified +
FailedReaction modified +
ReactionlikeEvent modified +
PathwayVertex modified +
FragmentDeletionModification modified +
Complex modified +
Publication modified +
FunctionalStatus modified +
SimpleEntity modified +
FrontPage modified +
CrosslinkedResidue modified +
Event modified +
_Release modified +
Vertex modified +
DatabaseObject modified +
Edge modified +
Regulation modified +
OtherEntity modified +
Polymer modified +
ReactionVertex modified +
GO_MolecularFunction modified +
ReferenceDatabase modified +
ReferenceGroup modified +
InstanceEdit modified +
ConcurrentEventSet modified +
GroupModifiedResidue modified +
SequenceOntology modified +
Requirement modified +
DatabaseIdentifier modified +
IntraChainCrosslinkedResidue modified +
Species modified +
Figure modified +
Reaction modified +
ReferenceDNASequence modified +
AbstractModifiedResidue modified +
BlackBoxEvent modified +
_InstanceBeforeChange modified +
_AttributeValueBeforeChange modified +
FragmentModification modified +
LiteratureReference modified +
VertexSearchableTerm modified +
DefinedSet modified +
EntityVertex modified +
PathwayCoordinates modified +
EntityWithAccessionedSequence modified +
CatalystActivity modified +
ReplacedResidue modified +
GO_CellularComponent modified +
ReferenceIsoform modified +
PhysicalEntity modified +
PathwayDiagram modified +
Polymerisation modified +
GO_BiologicalProcess modified +
NegativeRegulation modified +
ReferenceEntity modified +
StableIdentifier modified +
ReferenceRNASequence modified +
Summation modified +
ReactionCoordinates modified +
Pathway modified +
OpenSet modified +
ReferenceGeneProduct modified +
GeneticallyModifiedResidue modified +
GenomeEncodedEntity modified +
FunctionalStatusType modified +
Compartment modified +
EntityFunctionalStatus modified +
FragmentInsertionModification modified +
ExternalOntology modified +
Affiliation modified +
Person modified +
_Deleted modified +
Disease modified +
EntityCompartment modified +
CandidateSet modified +
DeletedControlledVocabulary modified +
FragmentReplacedModification modified +
ControlledVocabulary modified +
PathwayDiagramItem modified +
EvidenceType modified +
Taxon modified +
ReferenceMolecule modified +
Depolymerisation modified +
TranslationalModification modified +
ReferenceSequence modified +
URL modified +
PositiveRegulation modified +
PsiMod modified +
CellType modified +
Book modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.