Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
PhysicalEntity created 1
GenericDomain created 1
SequenceDomain created 1
ModifiedResidue created 1
ControlledVocabulary created 1
Publication created 1
DeletedControlledVocabulary created 1
Regulation created 1
Edge created 1
CellType created 1
Domain created 1
PathwayVertex created 1
Pathway created 1
SimpleEntity created 1
_Release created 1
IntraChainCrosslinkedResidue created 1
ReferenceEntity created 1
ComplexDomain created 1
Affiliation created 1
ReferenceMolecule created 1
Figure created 1
FunctionalStatusType created 1
GenomeEncodedEntity created 1
CandidateSet created 1
Species created 1
ReferenceDatabase created 1
EntityCompartment created 1
EvidenceType created 1
Summation created 1
ReferenceRNASequence created 1
DatabaseIdentifier created 1
FailedReaction created 1
Complex created 1
CrosslinkedResidue created 1
GO_CellularComponent created 1
FragmentDeletionModification created 1
ReactionVertex created 1
TranslationalModification created 1
ReferenceIsoform created 1
FragmentReplacedModification created 1
EntityFunctionalStatus created 1
FunctionalStatus created 1
_Deleted created 1
SequenceOntology created 1
PsiMod created 1
GeneticallyModifiedResidue created 1
OpenSet created 1
ReferenceSequence created 1
BlackBoxEvent created 1
FrontPage created 1
GO_BiologicalProcess created 1
URL created 1
InstanceEdit created 1
GO_MolecularFunction created 1
FragmentInsertionModification created 1
NegativeRegulation created 1
Taxon created 1
Depolymerisation created 1
InterChainCrosslinkedResidue created 1
ReferenceGeneProduct created 1
DatabaseObject created 1
PositiveRegulation created 1
ReplacedResidue created 1
Book created 1
StableIdentifier created 1
LiteratureReference created 1
_AttributeValueBeforeChange created 1
GroupModifiedResidue created 1
CatalystActivity created 1
EntitySet created 1
RegulationType created 1
FragmentModification created 1
DefinedSet created 1
Polymer created 1
Person created 1
Compartment created 1
OtherEntity created 1
ReferenceGroup created 1
Event created 1
EntityVertex created 1
PathwayDiagramItem created 1
AbstractModifiedResidue created 1
ConcurrentEventSet created 1
Polymerisation created 1
ReferenceDNASequence created 1
ReactionCoordinates created 1
ExternalOntology created 1
Reaction created 1
EntityWithAccessionedSequence created 1
PathwayDiagram created 1
VertexSearchableTerm created 1
Disease created 1
Requirement created 1
ReactionlikeEvent created 1
_InstanceBeforeChange created 1
PathwayCoordinates created 1
Vertex created 1
PhysicalEntity reviewed +
EntitySet reviewed +
OpenSet reviewed +
DefinedSet reviewed +
Polymer reviewed +
GenomeEncodedEntity reviewed +
CandidateSet reviewed +
Regulation reviewed +
BlackBoxEvent reviewed +
OtherEntity reviewed +
Event reviewed +
FailedReaction reviewed +
Complex reviewed +
NegativeRegulation reviewed +
Polymerisation reviewed +
Depolymerisation reviewed +
Reaction reviewed +
EntityWithAccessionedSequence reviewed +
Requirement reviewed +
SimpleEntity reviewed +
Pathway reviewed +
ReactionlikeEvent reviewed +
PositiveRegulation reviewed +
PhysicalEntity authored 1
EntitySet authored 1
OpenSet authored 1
DefinedSet authored 1
Polymer authored 1
GenomeEncodedEntity authored 1
CandidateSet authored 1
Regulation authored 1
BlackBoxEvent authored +
OtherEntity authored 1
Event authored +
FailedReaction authored +
Complex authored 1
NegativeRegulation authored 1
Polymerisation authored +
Depolymerisation authored +
Reaction authored +
EntityWithAccessionedSequence authored 1
Requirement authored 1
SimpleEntity authored 1
Pathway authored +
ReactionlikeEvent authored +
PositiveRegulation authored 1
PhysicalEntity revised +
EntitySet revised +
OpenSet revised +
DefinedSet revised +
Polymer revised +
GenomeEncodedEntity revised +
CandidateSet revised +
Regulation revised +
BlackBoxEvent revised +
OtherEntity revised +
Event revised +
FailedReaction revised +
Complex revised +
NegativeRegulation revised +
Polymerisation revised +
Depolymerisation revised +
Reaction revised +
EntityWithAccessionedSequence revised +
Requirement revised +
SimpleEntity revised +
Pathway revised +
ReactionlikeEvent revised +
PositiveRegulation revised +
_InstanceBeforeChange instanceEdit 1
PhysicalEntity modified +
GenericDomain modified +
SequenceDomain modified +
ModifiedResidue modified +
ControlledVocabulary modified +
Publication modified +
DeletedControlledVocabulary modified +
Regulation modified +
Edge modified +
CellType modified +
Domain modified +
PathwayVertex modified +
Pathway modified +
SimpleEntity modified +
_Release modified +
IntraChainCrosslinkedResidue modified +
ReferenceEntity modified +
ComplexDomain modified +
Affiliation modified +
ReferenceMolecule modified +
Figure modified +
FunctionalStatusType modified +
GenomeEncodedEntity modified +
CandidateSet modified +
Species modified +
ReferenceDatabase modified +
EntityCompartment modified +
EvidenceType modified +
Summation modified +
ReferenceRNASequence modified +
DatabaseIdentifier modified +
FailedReaction modified +
Complex modified +
CrosslinkedResidue modified +
GO_CellularComponent modified +
FragmentDeletionModification modified +
ReactionVertex modified +
TranslationalModification modified +
ReferenceIsoform modified +
FragmentReplacedModification modified +
EntityFunctionalStatus modified +
FunctionalStatus modified +
_Deleted modified +
SequenceOntology modified +
PsiMod modified +
GeneticallyModifiedResidue modified +
OpenSet modified +
ReferenceSequence modified +
BlackBoxEvent modified +
FrontPage modified +
GO_BiologicalProcess modified +
URL modified +
InstanceEdit modified +
GO_MolecularFunction modified +
FragmentInsertionModification modified +
NegativeRegulation modified +
Taxon modified +
Depolymerisation modified +
InterChainCrosslinkedResidue modified +
ReferenceGeneProduct modified +
DatabaseObject modified +
PositiveRegulation modified +
ReplacedResidue modified +
Book modified +
StableIdentifier modified +
LiteratureReference modified +
_AttributeValueBeforeChange modified +
GroupModifiedResidue modified +
CatalystActivity modified +
EntitySet modified +
RegulationType modified +
FragmentModification modified +
DefinedSet modified +
Polymer modified +
Person modified +
Compartment modified +
OtherEntity modified +
ReferenceGroup modified +
Event modified +
EntityVertex modified +
PathwayDiagramItem modified +
AbstractModifiedResidue modified +
ConcurrentEventSet modified +
Polymerisation modified +
ReferenceDNASequence modified +
ReactionCoordinates modified +
ExternalOntology modified +
Reaction modified +
EntityWithAccessionedSequence modified +
PathwayDiagram modified +
VertexSearchableTerm modified +
Disease modified +
Requirement modified +
ReactionlikeEvent modified +
_InstanceBeforeChange modified +
PathwayCoordinates modified +
Vertex modified +
PhysicalEntity edited +
EntitySet edited +
OpenSet edited +
DefinedSet edited +
Polymer edited +
GenomeEncodedEntity edited +
CandidateSet edited +
Regulation edited +
BlackBoxEvent edited +
OtherEntity edited +
Event edited +
FailedReaction edited +
Complex edited +
NegativeRegulation edited +
Polymerisation edited +
Depolymerisation edited +
Reaction edited +
EntityWithAccessionedSequence edited +
Requirement edited +
SimpleEntity edited +
Pathway edited +
ReactionlikeEvent edited +
PositiveRegulation edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.