Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
VertexSearchableTerm modified +
URL modified +
PsiMod modified +
Vertex modified +
CrosslinkedResidue modified +
Pathway modified +
ReferenceSequence modified +
GroupModifiedResidue modified +
DefinedSet modified +
ReplacedResidue modified +
GO_CellularComponent modified +
EntitySet modified +
PhysicalEntity modified +
SimpleEntity modified +
Edge modified +
FrontPage modified +
NegativeRegulation modified +
EvidenceType modified +
OtherEntity modified +
_InstanceBeforeChange modified +
ReactionVertex modified +
ReactionlikeEvent modified +
ReferenceIsoform modified +
AbstractModifiedResidue modified +
StableIdentifier modified +
Requirement modified +
EntityVertex modified +
ConcurrentEventSet modified +
EntityCompartment modified +
GenomeEncodedEntity modified +
Compartment modified +
Publication modified +
FragmentInsertionModification modified +
Reaction modified +
GO_MolecularFunction modified +
PathwayDiagram modified +
EntityWithAccessionedSequence modified +
Person modified +
Disease modified +
Book modified +
Regulation modified +
OpenSet modified +
ExternalOntology modified +
LiteratureReference modified +
_AttributeValueBeforeChange modified +
DatabaseIdentifier modified +
Summation modified +
FunctionalStatusType modified +
InstanceEdit modified +
Depolymerisation modified +
SequenceOntology modified +
Taxon modified +
FunctionalStatus modified +
FragmentDeletionModification modified +
CatalystActivity modified +
IntraChainCrosslinkedResidue modified +
GeneticallyModifiedResidue modified +
ReactionCoordinates modified +
ReferenceDNASequence modified +
CandidateSet modified +
_Release modified +
Complex modified +
Polymer modified +
PathwayVertex modified +
ModifiedResidue modified +
ControlledVocabulary modified +
Affiliation modified +
_Deleted modified +
FailedReaction modified +
Species modified +
PositiveRegulation modified +
Polymerisation modified +
GO_BiologicalProcess modified +
ReferenceGeneProduct modified +
FragmentReplacedModification modified +
InterChainCrosslinkedResidue modified +
PathwayCoordinates modified +
Figure modified +
ReferenceMolecule modified +
ReferenceRNASequence modified +
EntityFunctionalStatus modified +
Event modified +
TranslationalModification modified +
FragmentModification modified +
DeletedControlledVocabulary modified +
ReferenceDatabase modified +
PathwayDiagramItem modified +
CellType modified +
DatabaseObject modified +
ReferenceGroup modified +
ReferenceEntity modified +
BlackBoxEvent modified +
Event edited +
GenomeEncodedEntity edited +
Reaction edited +
ReactionlikeEvent edited +
CandidateSet edited +
Requirement edited +
EntityWithAccessionedSequence edited +
DefinedSet edited +
PhysicalEntity edited +
EntitySet edited +
Complex edited +
Polymer edited +
Pathway edited +
FailedReaction edited +
SimpleEntity edited +
Regulation edited +
OpenSet edited +
OtherEntity edited +
BlackBoxEvent edited +
PositiveRegulation edited +
Polymerisation edited +
NegativeRegulation edited +
Depolymerisation edited +
Reaction revised +
Event revised +
GenomeEncodedEntity revised +
Requirement revised +
CandidateSet revised +
ReactionlikeEvent revised +
EntitySet revised +
PhysicalEntity revised +
EntityWithAccessionedSequence revised +
DefinedSet revised +
Pathway revised +
Polymer revised +
Complex revised +
FailedReaction revised +
OpenSet revised +
SimpleEntity revised +
Regulation revised +
BlackBoxEvent revised +
OtherEntity revised +
Depolymerisation revised +
Polymerisation revised +
NegativeRegulation revised +
PositiveRegulation revised +
_InstanceBeforeChange instanceEdit 1
FrontPage created 1
Edge created 1
SimpleEntity created 1
_InstanceBeforeChange created 1
EvidenceType created 1
OtherEntity created 1
NegativeRegulation created 1
PsiMod created 1
URL created 1
VertexSearchableTerm created 1
EntitySet created 1
PhysicalEntity created 1
ReplacedResidue created 1
DefinedSet created 1
GO_CellularComponent created 1
GroupModifiedResidue created 1
Pathway created 1
CrosslinkedResidue created 1
ReferenceSequence created 1
Vertex created 1
DatabaseIdentifier created 1
_AttributeValueBeforeChange created 1
ExternalOntology created 1
LiteratureReference created 1
OpenSet created 1
Regulation created 1
Book created 1
Disease created 1
IntraChainCrosslinkedResidue created 1
CatalystActivity created 1
FragmentDeletionModification created 1
FunctionalStatus created 1
SequenceOntology created 1
Depolymerisation created 1
Taxon created 1
InstanceEdit created 1
FunctionalStatusType created 1
Summation created 1
FragmentInsertionModification created 1
Reaction created 1
GenomeEncodedEntity created 1
Compartment created 1
Publication created 1
EntityCompartment created 1
EntityVertex created 1
ConcurrentEventSet created 1
Requirement created 1
StableIdentifier created 1
AbstractModifiedResidue created 1
ReferenceIsoform created 1
ReactionVertex created 1
ReactionlikeEvent created 1
Person created 1
EntityWithAccessionedSequence created 1
PathwayDiagram created 1
GO_MolecularFunction created 1
FailedReaction created 1
_Deleted created 1
Affiliation created 1
ControlledVocabulary created 1
ModifiedResidue created 1
FragmentReplacedModification created 1
ReferenceGeneProduct created 1
GO_BiologicalProcess created 1
Polymerisation created 1
PositiveRegulation created 1
Species created 1
_Release created 1
ReferenceDNASequence created 1
CandidateSet created 1
GeneticallyModifiedResidue created 1
ReactionCoordinates created 1
PathwayVertex created 1
Polymer created 1
Complex created 1
PathwayDiagramItem created 1
DeletedControlledVocabulary created 1
ReferenceDatabase created 1
FragmentModification created 1
TranslationalModification created 1
BlackBoxEvent created 1
ReferenceEntity created 1
DatabaseObject created 1
ReferenceGroup created 1
CellType created 1
EntityFunctionalStatus created 1
Event created 1
ReferenceMolecule created 1
ReferenceRNASequence created 1
InterChainCrosslinkedResidue created 1
Figure created 1
PathwayCoordinates created 1
PositiveRegulation reviewed +
NegativeRegulation reviewed +
Polymerisation reviewed +
Depolymerisation reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
SimpleEntity reviewed +
Regulation reviewed +
OpenSet reviewed +
FailedReaction reviewed +
Complex reviewed +
Polymer reviewed +
Pathway reviewed +
DefinedSet reviewed +
EntityWithAccessionedSequence reviewed +
PhysicalEntity reviewed +
EntitySet reviewed +
ReactionlikeEvent reviewed +
CandidateSet reviewed +
Requirement reviewed +
Event reviewed +
GenomeEncodedEntity reviewed +
Reaction reviewed +
SimpleEntity authored 1
Regulation authored 1
OpenSet authored 1
FailedReaction authored +
PositiveRegulation authored 1
NegativeRegulation authored 1
Polymerisation authored +
Depolymerisation authored +
OtherEntity authored 1
BlackBoxEvent authored +
ReactionlikeEvent authored +
CandidateSet authored 1
Requirement authored 1
Event authored +
GenomeEncodedEntity authored 1
Reaction authored +
Complex authored 1
Polymer authored 1
Pathway authored +
EntityWithAccessionedSequence authored 1
DefinedSet authored 1
PhysicalEntity authored 1
EntitySet authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.