Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Event authored +
DefinedSet authored 1
NegativeGeneExpressionRegulation authored 1
Requirement authored 1
NegativeRegulation authored 1
PhysicalEntity authored 1
Pathway authored +
Polymerisation authored +
SimpleEntity authored 1
BlackBoxEvent authored +
OpenSet authored 1
Regulation authored 1
Complex authored 1
OtherEntity authored 1
ReactionlikeEvent authored +
FailedReaction authored +
PositiveRegulation authored 1
Depolymerisation authored +
PositiveGeneExpressionRegulation authored 1
Reaction authored +
CandidateSet authored 1
GenomeEncodedEntity authored 1
EntityWithAccessionedSequence authored 1
EntitySet authored 1
Polymer authored 1
Polymer edited +
EntitySet edited +
EntityWithAccessionedSequence edited +
GenomeEncodedEntity edited +
CandidateSet edited +
Reaction edited +
PositiveGeneExpressionRegulation edited +
Depolymerisation edited +
PositiveRegulation edited +
FailedReaction edited +
ReactionlikeEvent edited +
Complex edited +
OtherEntity edited +
Regulation edited +
BlackBoxEvent edited +
OpenSet edited +
SimpleEntity edited +
Polymerisation edited +
PhysicalEntity edited +
Pathway edited +
NegativeRegulation edited +
Requirement edited +
NegativeGeneExpressionRegulation edited +
DefinedSet edited +
Event edited +
FailedReaction reviewed +
PositiveRegulation reviewed +
Depolymerisation reviewed +
Reaction reviewed +
PositiveGeneExpressionRegulation reviewed +
CandidateSet reviewed +
GenomeEncodedEntity reviewed +
EntityWithAccessionedSequence reviewed +
EntitySet reviewed +
Polymer reviewed +
Event reviewed +
DefinedSet reviewed +
Requirement reviewed +
NegativeGeneExpressionRegulation reviewed +
NegativeRegulation reviewed +
PhysicalEntity reviewed +
Pathway reviewed +
Polymerisation reviewed +
SimpleEntity reviewed +
OpenSet reviewed +
BlackBoxEvent reviewed +
Regulation reviewed +
OtherEntity reviewed +
Complex reviewed +
ReactionlikeEvent reviewed +
ReferenceEntity created 1
Book created 1
PhysicalEntity created 1
URL created 1
PathwayVertex created 1
ModifiedResidue created 1
NegativeRegulation created 1
PsiMod created 1
GroupModifiedResidue created 1
OtherEntity created 1
FragmentDeletionModification created 1
Figure created 1
_Release created 1
DeletedControlledVocabulary created 1
PathwayCoordinates created 1
GO_CellularComponent created 1
GenomeEncodedEntity created 1
EntitySet created 1
Polymerisation created 1
EvidenceType created 1
NegativeGeneExpressionRegulation created 1
Taxon created 1
ReferenceRNASequence created 1
ReactionlikeEvent created 1
ReferenceDNASequence created 1
_AttributeValueBeforeChange created 1
DatabaseIdentifier created 1
EntityCompartment created 1
OpenSet created 1
BlackBoxEvent created 1
FragmentModification created 1
Regulation created 1
ConcurrentEventSet created 1
PathwayDiagram created 1
FunctionalStatus created 1
ReferenceDatabase created 1
Depolymerisation created 1
FrontPage created 1
PositiveRegulation created 1
GeneticallyModifiedResidue created 1
Summation created 1
ReactionVertex created 1
CrosslinkedResidue created 1
ReactionCoordinates created 1
CandidateSet created 1
Compartment created 1
TranslationalModification created 1
Pathway created 1
IntraChainCrosslinkedResidue created 1
VertexSearchableTerm created 1
LiteratureReference created 1
EntityVertex created 1
SimpleEntity created 1
ReplacedResidue created 1
Complex created 1
Vertex created 1
Publication created 1
Edge created 1
Reaction created 1
PositiveGeneExpressionRegulation created 1
Affiliation created 1
_Deleted created 1
GO_BiologicalProcess created 1
ReferenceGroup created 1
FragmentReplacedModification created 1
CellType created 1
Polymer created 1
ControlledVocabulary created 1
GO_MolecularFunction created 1
FragmentInsertionModification created 1
DatabaseObject created 1
AbstractModifiedResidue created 1
EntityFunctionalStatus created 1
Event created 1
StableIdentifier created 1
DefinedSet created 1
ReferenceGeneProduct created 1
Requirement created 1
CatalystActivity created 1
ReferenceSequence created 1
InterChainCrosslinkedResidue created 1
SequenceOntology created 1
ReferenceMolecule created 1
ExternalOntology created 1
InstanceEdit created 1
ReferenceIsoform created 1
Species created 1
FailedReaction created 1
PathwayDiagramItem created 1
FunctionalStatusType created 1
Disease created 1
Person created 1
_InstanceBeforeChange created 1
EntityWithAccessionedSequence created 1
ReactionlikeEvent revised +
Regulation revised +
OtherEntity revised +
Complex revised +
SimpleEntity revised +
BlackBoxEvent revised +
OpenSet revised +
PhysicalEntity revised +
Pathway revised +
Polymerisation revised +
NegativeRegulation revised +
DefinedSet revised +
Event revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
Polymer revised +
EntitySet revised +
CandidateSet revised +
GenomeEncodedEntity revised +
EntityWithAccessionedSequence revised +
Depolymerisation revised +
PositiveGeneExpressionRegulation revised +
Reaction revised +
PositiveRegulation revised +
FailedReaction revised +
_InstanceBeforeChange instanceEdit 1
GeneticallyModifiedResidue modified +
PositiveRegulation modified +
Depolymerisation modified +
FrontPage modified +
ConcurrentEventSet modified +
PathwayDiagram modified +
FunctionalStatus modified +
ReferenceDatabase modified +
Compartment modified +
CandidateSet modified +
CrosslinkedResidue modified +
ReactionVertex modified +
ReactionCoordinates modified +
Summation modified +
ReferenceRNASequence modified +
Taxon modified +
EvidenceType modified +
NegativeGeneExpressionRegulation modified +
Polymerisation modified +
FragmentModification modified +
Regulation modified +
BlackBoxEvent modified +
EntityCompartment modified +
OpenSet modified +
ReactionlikeEvent modified +
DatabaseIdentifier modified +
_AttributeValueBeforeChange modified +
ReferenceDNASequence modified +
_Release modified +
Figure modified +
EntitySet modified +
GenomeEncodedEntity modified +
GO_CellularComponent modified +
DeletedControlledVocabulary modified +
PathwayCoordinates modified +
NegativeRegulation modified +
URL modified +
ModifiedResidue modified +
PathwayVertex modified +
PhysicalEntity modified +
Book modified +
ReferenceEntity modified +
OtherEntity modified +
FragmentDeletionModification modified +
GroupModifiedResidue modified +
PsiMod modified +
PathwayDiagramItem modified +
Species modified +
FailedReaction modified +
ReferenceIsoform modified +
InstanceEdit modified +
Person modified +
_InstanceBeforeChange modified +
EntityWithAccessionedSequence modified +
FunctionalStatusType modified +
Disease modified +
CatalystActivity modified +
EntityFunctionalStatus modified +
StableIdentifier modified +
Event modified +
DefinedSet modified +
ReferenceGeneProduct modified +
Requirement modified +
AbstractModifiedResidue modified +
ExternalOntology modified +
ReferenceMolecule modified +
InterChainCrosslinkedResidue modified +
SequenceOntology modified +
ReferenceSequence modified +
ReferenceGroup modified +
FragmentReplacedModification modified +
_Deleted modified +
GO_BiologicalProcess modified +
Edge modified +
Reaction modified +
PositiveGeneExpressionRegulation modified +
Affiliation modified +
Vertex modified +
Publication modified +
DatabaseObject modified +
GO_MolecularFunction modified +
FragmentInsertionModification modified +
CellType modified +
ControlledVocabulary modified +
Polymer modified +
VertexSearchableTerm modified +
IntraChainCrosslinkedResidue modified +
Pathway modified +
TranslationalModification modified +
ReplacedResidue modified +
Complex modified +
SimpleEntity modified +
EntityVertex modified +
LiteratureReference modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.