Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Reaction authored +
SimpleEntity authored 1
FailedReaction authored +
PhysicalEntity authored 1
Depolymerisation authored +
Polymerisation authored +
NegativeRegulation authored 1
OtherEntity authored 1
Requirement authored 1
NegativeGeneExpressionRegulation authored 1
DefinedSet authored 1
EntityWithAccessionedSequence authored 1
GenomeEncodedEntity authored 1
Pathway authored +
Event authored +
Regulation authored 1
EntitySet authored 1
ReactionlikeEvent authored +
BlackBoxEvent authored +
PositiveRegulation authored 1
Polymer authored 1
OpenSet authored 1
PositiveGeneExpressionRegulation authored 1
Complex authored 1
CandidateSet authored 1
_InstanceBeforeChange instanceEdit 1
GO_MolecularFunction modified +
GO_BiologicalProcess modified +
ReactionCoordinates modified +
FragmentInsertionModification modified +
Depolymerisation modified +
OtherEntity modified +
NegativeRegulation modified +
ConcurrentEventSet modified +
SimpleEntity modified +
FailedReaction modified +
ReferenceEntity modified +
CrosslinkedResidue modified +
_Deleted modified +
Summation modified +
ReferenceDatabase modified +
PositiveGeneExpressionRegulation modified +
CatalystActivity modified +
AbstractModifiedResidue modified +
BlackBoxEvent modified +
EntityFunctionalStatus modified +
InterChainCrosslinkedResidue modified +
EntityCompartment modified +
GenomeEncodedEntity modified +
Pathway modified +
Requirement modified +
ReferenceMolecule modified +
ReferenceGeneProduct modified +
PhysicalEntity modified +
Edge modified +
PsiMod modified +
PathwayVertex modified +
StableIdentifier modified +
_AttributeValueBeforeChange modified +
DatabaseIdentifier modified +
_Release modified +
ReferenceSequence modified +
Complex modified +
ControlledVocabulary modified +
Polymer modified +
GO_CellularComponent modified +
PositiveRegulation modified +
ReactionVertex modified +
ReactionlikeEvent modified +
CellType modified +
DefinedSet modified +
Compartment modified +
GroupModifiedResidue modified +
InstanceEdit modified +
PathwayDiagram modified +
ReferenceIsoform modified +
NegativeGeneExpressionRegulation modified +
DeletedControlledVocabulary modified +
Book modified +
FunctionalStatusType modified +
VertexSearchableTerm modified +
Reaction modified +
Affiliation modified +
URL modified +
Person modified +
Publication modified +
FragmentDeletionModification modified +
LiteratureReference modified +
Figure modified +
ModifiedResidue modified +
ReplacedResidue modified +
FrontPage modified +
Regulation modified +
GeneticallyModifiedResidue modified +
EntityWithAccessionedSequence modified +
PathwayCoordinates modified +
SequenceOntology modified +
PathwayDiagramItem modified +
IntraChainCrosslinkedResidue modified +
ReferenceGroup modified +
EvidenceType modified +
ReferenceRNASequence modified +
Polymerisation modified +
ReferenceDNASequence modified +
_InstanceBeforeChange modified +
EntityVertex modified +
FunctionalStatus modified +
CandidateSet modified +
Taxon modified +
Disease modified +
FragmentReplacedModification modified +
OpenSet modified +
DatabaseObject modified +
TranslationalModification modified +
ExternalOntology modified +
Event modified +
FragmentModification modified +
EntitySet modified +
Vertex modified +
Species modified +
FailedReaction reviewed +
SimpleEntity reviewed +
Reaction reviewed +
OtherEntity reviewed +
NegativeRegulation reviewed +
Polymerisation reviewed +
Depolymerisation reviewed +
PhysicalEntity reviewed +
NegativeGeneExpressionRegulation reviewed +
Requirement reviewed +
GenomeEncodedEntity reviewed +
Pathway reviewed +
EntityWithAccessionedSequence reviewed +
DefinedSet reviewed +
EntitySet reviewed +
Regulation reviewed +
ReactionlikeEvent reviewed +
Event reviewed +
Polymer reviewed +
PositiveRegulation reviewed +
BlackBoxEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
Complex reviewed +
OpenSet reviewed +
CandidateSet reviewed +
Reaction revised +
SimpleEntity revised +
FailedReaction revised +
PhysicalEntity revised +
Depolymerisation revised +
Polymerisation revised +
OtherEntity revised +
NegativeRegulation revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
DefinedSet revised +
EntityWithAccessionedSequence revised +
Pathway revised +
GenomeEncodedEntity revised +
Event revised +
EntitySet revised +
Regulation revised +
ReactionlikeEvent revised +
BlackBoxEvent revised +
PositiveRegulation revised +
Polymer revised +
OpenSet revised +
Complex revised +
PositiveGeneExpressionRegulation revised +
CandidateSet revised +
Event created 1
FragmentModification created 1
EntitySet created 1
Vertex created 1
Species created 1
DatabaseObject created 1
TranslationalModification created 1
ExternalOntology created 1
OpenSet created 1
FragmentReplacedModification created 1
FunctionalStatus created 1
Disease created 1
CandidateSet created 1
Taxon created 1
_InstanceBeforeChange created 1
ReferenceDNASequence created 1
EntityVertex created 1
PathwayDiagramItem created 1
EvidenceType created 1
ReferenceRNASequence created 1
Polymerisation created 1
ReferenceGroup created 1
IntraChainCrosslinkedResidue created 1
SequenceOntology created 1
GeneticallyModifiedResidue created 1
EntityWithAccessionedSequence created 1
PathwayCoordinates created 1
Regulation created 1
ModifiedResidue created 1
FrontPage created 1
ReplacedResidue created 1
Publication created 1
FragmentDeletionModification created 1
LiteratureReference created 1
Figure created 1
URL created 1
Person created 1
Reaction created 1
Affiliation created 1
Book created 1
FunctionalStatusType created 1
VertexSearchableTerm created 1
ReferenceIsoform created 1
PathwayDiagram created 1
InstanceEdit created 1
NegativeGeneExpressionRegulation created 1
DeletedControlledVocabulary created 1
DefinedSet created 1
GroupModifiedResidue created 1
Compartment created 1
ReactionVertex created 1
CellType created 1
ReactionlikeEvent created 1
ControlledVocabulary created 1
PositiveRegulation created 1
GO_CellularComponent created 1
Polymer created 1
DatabaseIdentifier created 1
Complex created 1
_Release created 1
ReferenceSequence created 1
StableIdentifier created 1
_AttributeValueBeforeChange created 1
Edge created 1
PathwayVertex created 1
PsiMod created 1
PhysicalEntity created 1
ReferenceGeneProduct created 1
ReferenceMolecule created 1
Requirement created 1
EntityCompartment created 1
Pathway created 1
GenomeEncodedEntity created 1
InterChainCrosslinkedResidue created 1
EntityFunctionalStatus created 1
BlackBoxEvent created 1
AbstractModifiedResidue created 1
CatalystActivity created 1
Summation created 1
ReferenceDatabase created 1
PositiveGeneExpressionRegulation created 1
CrosslinkedResidue created 1
ReferenceEntity created 1
_Deleted created 1
ConcurrentEventSet created 1
SimpleEntity created 1
FailedReaction created 1
FragmentInsertionModification created 1
Depolymerisation created 1
NegativeRegulation created 1
OtherEntity created 1
GO_MolecularFunction created 1
ReactionCoordinates created 1
GO_BiologicalProcess created 1
PositiveRegulation edited +
Polymer edited +
BlackBoxEvent edited +
ReactionlikeEvent edited +
Regulation edited +
EntitySet edited +
Event edited +
CandidateSet edited +
PositiveGeneExpressionRegulation edited +
Complex edited +
OpenSet edited +
Polymerisation edited +
NegativeRegulation edited +
OtherEntity edited +
PhysicalEntity edited +
Depolymerisation edited +
FailedReaction edited +
Reaction edited +
SimpleEntity edited +
GenomeEncodedEntity edited +
Pathway edited +
DefinedSet edited +
EntityWithAccessionedSequence edited +
NegativeGeneExpressionRegulation edited +
Requirement edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.