Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
CellType modified +
DefinedSet modified +
ReferenceSequence modified +
PathwayVertex modified +
Polymer modified +
FragmentInsertionModification modified +
EntitySet modified +
ReferenceDatabase modified +
SimpleEntity modified +
_Deleted modified +
StableIdentifier modified +
PathwayDiagram modified +
GroupModifiedResidue modified +
FunctionalStatus modified +
ReactionVertex modified +
PsiMod modified +
Affiliation modified +
FragmentModification modified +
ReactionlikeEvent modified +
EntityWithAccessionedSequence modified +
Species modified +
Publication modified +
TranslationalModification modified +
_InstanceBeforeChange modified +
ReplacedResidue modified +
Edge modified +
GeneticallyModifiedResidue modified +
GO_CellularComponent modified +
PathwayDiagramItem modified +
_Release modified +
Requirement modified +
AbstractModifiedResidue modified +
DatabaseObject modified +
ReactionCoordinates modified +
PositiveGeneExpressionRegulation modified +
Compartment modified +
ReferenceGroup modified +
VertexSearchableTerm modified +
Disease modified +
BlackBoxEvent modified +
GenomeEncodedEntity modified +
CandidateSet modified +
ConcurrentEventSet modified +
Taxon modified +
Depolymerisation modified +
LiteratureReference modified +
Polymerisation modified +
PhysicalEntity modified +
PathwayCoordinates modified +
FailedReaction modified +
ExternalOntology modified +
FunctionalStatusType modified +
Complex modified +
OpenSet modified +
ReferenceDNASequence modified +
InterChainCrosslinkedResidue modified +
DeletedControlledVocabulary modified +
Reaction modified +
URL modified +
EntityCompartment modified +
DatabaseIdentifier modified +
EntityFunctionalStatus modified +
ControlledVocabulary modified +
ReferenceIsoform modified +
GO_MolecularFunction modified +
NegativeGeneExpressionRegulation modified +
FragmentDeletionModification modified +
GO_BiologicalProcess modified +
InstanceEdit modified +
SequenceOntology modified +
Pathway modified +
ModifiedResidue modified +
EvidenceType modified +
_AttributeValueBeforeChange modified +
ReferenceGeneProduct modified +
CrosslinkedResidue modified +
FrontPage modified +
ReferenceMolecule modified +
EntityVertex modified +
Regulation modified +
Person modified +
Vertex modified +
ReferenceRNASequence modified +
FragmentReplacedModification modified +
Summation modified +
PositiveRegulation modified +
CatalystActivity modified +
Event modified +
IntraChainCrosslinkedResidue modified +
Figure modified +
Book modified +
ReferenceEntity modified +
OtherEntity modified +
NegativeRegulation modified +
DeletedControlledVocabulary created 1
Reaction created 1
URL created 1
EntityCompartment created 1
DatabaseIdentifier created 1
ReferenceIsoform created 1
EntityFunctionalStatus created 1
ControlledVocabulary created 1
OpenSet created 1
Complex created 1
ReferenceDNASequence created 1
InterChainCrosslinkedResidue created 1
GO_BiologicalProcess created 1
InstanceEdit created 1
ModifiedResidue created 1
SequenceOntology created 1
Pathway created 1
NegativeGeneExpressionRegulation created 1
GO_MolecularFunction created 1
FragmentDeletionModification created 1
FrontPage created 1
ReferenceGeneProduct created 1
CrosslinkedResidue created 1
Regulation created 1
Person created 1
ReferenceMolecule created 1
EntityVertex created 1
EvidenceType created 1
_AttributeValueBeforeChange created 1
Event created 1
Figure created 1
IntraChainCrosslinkedResidue created 1
CatalystActivity created 1
NegativeRegulation created 1
Book created 1
ReferenceEntity created 1
OtherEntity created 1
ReferenceRNASequence created 1
Vertex created 1
Summation created 1
PositiveRegulation created 1
FragmentReplacedModification created 1
EntitySet created 1
FragmentInsertionModification created 1
Polymer created 1
GroupModifiedResidue created 1
ReactionVertex created 1
FunctionalStatus created 1
_Deleted created 1
SimpleEntity created 1
ReferenceDatabase created 1
PathwayDiagram created 1
StableIdentifier created 1
ReferenceSequence created 1
PathwayVertex created 1
CellType created 1
DefinedSet created 1
ReplacedResidue created 1
GeneticallyModifiedResidue created 1
Edge created 1
TranslationalModification created 1
_InstanceBeforeChange created 1
_Release created 1
GO_CellularComponent created 1
PathwayDiagramItem created 1
EntityWithAccessionedSequence created 1
ReactionlikeEvent created 1
Affiliation created 1
FragmentModification created 1
Species created 1
PsiMod created 1
Publication created 1
PositiveGeneExpressionRegulation created 1
ReactionCoordinates created 1
ReferenceGroup created 1
Compartment created 1
Requirement created 1
AbstractModifiedResidue created 1
DatabaseObject created 1
FailedReaction created 1
PhysicalEntity created 1
PathwayCoordinates created 1
FunctionalStatusType created 1
ExternalOntology created 1
Taxon created 1
ConcurrentEventSet created 1
VertexSearchableTerm created 1
Disease created 1
CandidateSet created 1
GenomeEncodedEntity created 1
BlackBoxEvent created 1
Depolymerisation created 1
LiteratureReference created 1
Polymerisation created 1
OpenSet edited +
Requirement edited +
Complex edited +
DefinedSet edited +
EntitySet edited +
PositiveGeneExpressionRegulation edited +
Polymer edited +
Reaction edited +
Regulation edited +
SimpleEntity edited +
EntityWithAccessionedSequence edited +
ReactionlikeEvent edited +
BlackBoxEvent edited +
CandidateSet edited +
GenomeEncodedEntity edited +
Polymerisation edited +
PositiveRegulation edited +
Depolymerisation edited +
NegativeGeneExpressionRegulation edited +
Event edited +
FailedReaction edited +
PhysicalEntity edited +
NegativeRegulation edited +
OtherEntity edited +
Pathway edited +
Requirement reviewed +
Complex reviewed +
DefinedSet reviewed +
OpenSet reviewed +
SimpleEntity reviewed +
Regulation reviewed +
Polymer reviewed +
Reaction reviewed +
PositiveGeneExpressionRegulation reviewed +
EntitySet reviewed +
NegativeGeneExpressionRegulation reviewed +
Depolymerisation reviewed +
Polymerisation reviewed +
PositiveRegulation reviewed +
CandidateSet reviewed +
BlackBoxEvent reviewed +
GenomeEncodedEntity reviewed +
ReactionlikeEvent reviewed +
EntityWithAccessionedSequence reviewed +
Pathway reviewed +
OtherEntity reviewed +
NegativeRegulation reviewed +
PhysicalEntity reviewed +
FailedReaction reviewed +
Event reviewed +
EntityWithAccessionedSequence revised +
ReactionlikeEvent revised +
GenomeEncodedEntity revised +
CandidateSet revised +
BlackBoxEvent revised +
Depolymerisation revised +
NegativeGeneExpressionRegulation revised +
PositiveRegulation revised +
Polymerisation revised +
FailedReaction revised +
Event revised +
PhysicalEntity revised +
NegativeRegulation revised +
OtherEntity revised +
Pathway revised +
OpenSet revised +
Requirement revised +
Complex revised +
DefinedSet revised +
PositiveGeneExpressionRegulation revised +
EntitySet revised +
Polymer revised +
Reaction revised +
Regulation revised +
SimpleEntity revised +
_InstanceBeforeChange instanceEdit 1
EntityWithAccessionedSequence authored 1
ReactionlikeEvent authored +
CandidateSet authored 1
BlackBoxEvent authored +
GenomeEncodedEntity authored 1
Polymerisation authored +
PositiveRegulation authored 1
Depolymerisation authored +
NegativeGeneExpressionRegulation authored 1
Event authored +
FailedReaction authored +
PhysicalEntity authored 1
NegativeRegulation authored 1
Pathway authored +
OtherEntity authored 1
OpenSet authored 1
Complex authored 1
DefinedSet authored 1
Requirement authored 1
PositiveGeneExpressionRegulation authored 1
EntitySet authored 1
Polymer authored 1
Reaction authored +
Regulation authored 1
SimpleEntity authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.