Reactome: A Curated Pathway Database

Attributes of class 'OpenSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
referenceEntity 1 INSTANCE ReferenceEntity OpenSet ALL INTEGER(10) UNSIGNED
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'OpenSet' instances

Class name Attribute name Cardinality
OpenSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
SimpleEntity inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
OpenSet inferredTo +
GenomeEncodedEntity inferredTo +
CandidateSet inferredTo +
DefinedSet inferredTo +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Complex hasComponent +
EntityVertex representedInstance 1
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
OtherEntity inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
CandidateSet inferredFrom +
GenomeEncodedEntity inferredFrom +
OpenSet inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
ConcurrentEventSet focusEntity +
_Deleted replacementInstances +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
NegativeRegulation activeUnit +
Regulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
CandidateSet hasCandidate +
Reaction output +
Depolymerisation output +
ReactionlikeEvent output +
FailedReaction output +
BlackBoxEvent output +
Polymerisation output +
Polymer repeatedUnit +
Polymerisation input +
FailedReaction input +
BlackBoxEvent input +
ReactionlikeEvent input +
Depolymerisation input +
Reaction input +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
VertexSearchableTerm termProvider +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.