Reactome: A Curated Pathway Database

Attributes of class 'Polymer'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Polymer   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Polymer   TEXT
maxUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
minUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
repeatedUnit + INSTANCE PhysicalEntity Polymer ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Polymer   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Polymer   TEXT

Referers of class 'Polymer' instances

Class name Attribute name Cardinality
OpenSet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
FailedReaction input +
ReactionlikeEvent input +
BlackBoxEvent input +
Polymerisation input +
Depolymerisation input +
Reaction input +
_Deleted replacementInstances +
EntityVertex representedInstance 1
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
ReactionlikeEvent output +
FailedReaction output +
BlackBoxEvent output +
Reaction output +
Depolymerisation output +
Polymerisation output +
VertexSearchableTerm termProvider +
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
Complex hasComponent +
Polymer repeatedUnit +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
CandidateSet hasCandidate +
ConcurrentEventSet focusEntity +
OtherEntity inferredFrom +
Complex inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
PhysicalEntity inferredFrom +
OpenSet inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
OpenSet inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
EntitySet inferredTo +
PhysicalEntity inferredTo +
NegativeRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Requirement regulator 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.