Reactome: A Curated Pathway Database

Attributes of class 'Polymer'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Polymer   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Polymer   TEXT
maxUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
minUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
repeatedUnit + INSTANCE PhysicalEntity Polymer ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Polymer   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Polymer   TEXT

Referers of class 'Polymer' instances

Class name Attribute name Cardinality
Depolymerisation input +
FailedReaction input +
Reaction input +
Polymerisation input +
BlackBoxEvent input +
ReactionlikeEvent input +
ConcurrentEventSet focusEntity +
DefinedSet inferredTo +
OpenSet inferredTo +
CandidateSet inferredTo +
Complex inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
Complex hasComponent +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
_Deleted replacementInstances +
PhysicalEntity inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
Polymer inferredFrom +
Complex inferredFrom +
OpenSet inferredFrom +
DefinedSet inferredFrom +
VertexSearchableTerm termProvider +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
DefinedSet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
Polymer repeatedUnit +
CandidateSet hasCandidate +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
ReactionlikeEvent output +
Polymerisation output +
BlackBoxEvent output +
FailedReaction output +
Reaction output +
Depolymerisation output +
EntityVertex representedInstance 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.