Reactome: A Curated Pathway Database

Attributes of class 'Species'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
abbreviation 1 TEXT N/A Species   TEXT
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier Taxon   INTEGER(10) UNSIGNED
figure + INSTANCE Figure Species   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A Taxon ANY varchar(255)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
superTaxon 1 INSTANCE Taxon Taxon   INTEGER(10) UNSIGNED

Referers of class 'Species' instances

Class name Attribute name Cardinality
BlackBoxEvent species +
ReferenceGeneProduct species 1
SimpleEntity species 1
ReferenceRNASequence species 1
Event species +
CandidateSet species +
Depolymerisation species +
FailedReaction species +
OpenSet species +
ReferenceSequence species 1
VertexSearchableTerm species 1
ReferenceIsoform species 1
DefinedSet species +
Polymer species +
EntityWithAccessionedSequence species 1
Polymerisation species +
GenomeEncodedEntity species 1
Complex species +
ReactionlikeEvent species +
Pathway species +
EntitySet species +
ReferenceDNASequence species 1
Reaction species +
EntitySet relatedSpecies +
Reaction relatedSpecies +
Depolymerisation relatedSpecies +
FailedReaction relatedSpecies +
OpenSet relatedSpecies +
Complex relatedSpecies +
ReactionlikeEvent relatedSpecies +
Pathway relatedSpecies +
CandidateSet relatedSpecies +
Event relatedSpecies +
Polymerisation relatedSpecies +
BlackBoxEvent relatedSpecies +
DefinedSet relatedSpecies +
Species superTaxon 1
Taxon superTaxon 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.