Reactome: A Curated Pathway Database
Attention
The EBI data centre will be shutting down from the afternoon (BST) of Friday 26th August until the afternoon of Tuesday 30th August 2016 for essential maintenance. This might have an impact on some Reactome services and we apologize for any inconvenience.

Attributes of class 'Species'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier Taxon   INTEGER(10) UNSIGNED
figure + INSTANCE Figure Species   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A Taxon ANY varchar(255)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
superTaxon 1 INSTANCE Taxon Taxon   INTEGER(10) UNSIGNED

Referers of class 'Species' instances

Class name Attribute name Cardinality
Reaction relatedSpecies +
ReactionlikeEvent relatedSpecies +
Polymerisation relatedSpecies +
Event relatedSpecies +
Depolymerisation relatedSpecies +
FailedReaction relatedSpecies +
Pathway relatedSpecies +
BlackBoxEvent relatedSpecies +
Taxon superTaxon 1
Species superTaxon 1
FailedReaction species +
BlackBoxEvent species +
OpenSet species +
CandidateSet species +
ReferenceGeneProduct species 1
DefinedSet species +
ReactionlikeEvent species +
GenomeEncodedEntity species 1
Reaction species +
Depolymerisation species +
ReferenceDNASequence species 1
EntitySet species +
ReferenceIsoform species 1
EntityWithAccessionedSequence species 1
Complex species +
VertexSearchableTerm species 1
Polymer species +
Pathway species +
Event species +
Polymerisation species +
ReferenceSequence species 1
ReferenceRNASequence species 1
SimpleEntity species 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.