Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
LiteratureReference stableIdentifier 1
Summation stableIdentifier 1
Polymer stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Edge stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
PsiMod stableIdentifier 1
ReactionVertex stableIdentifier 1
Requirement stableIdentifier 1
Compartment stableIdentifier 1
SequenceOntology stableIdentifier 1
CandidateSet stableIdentifier 1
_Deleted stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ReferenceIsoform stableIdentifier 1
DatabaseObject stableIdentifier 1
EntityVertex stableIdentifier 1
Person stableIdentifier 1
Depolymerisation stableIdentifier 1
Event stableIdentifier 1
CellType stableIdentifier 1
FrontPage stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
OtherEntity stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Species stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Reaction stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ModifiedResidue stableIdentifier 1
InstanceEdit stableIdentifier 1
Complex stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
EvidenceType stableIdentifier 1
StableIdentifier stableIdentifier 1
FunctionalStatusType stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Vertex stableIdentifier 1
Pathway stableIdentifier 1
PathwayDiagram stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
PathwayVertex stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Polymerisation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceGroup stableIdentifier 1
Regulation stableIdentifier 1
ReplacedResidue stableIdentifier 1
GO_CellularComponent stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
ReferenceSequence stableIdentifier 1
SimpleEntity stableIdentifier 1
ExternalOntology stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Taxon stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Book stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
FailedReaction stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Disease stableIdentifier 1
CatalystActivity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Figure stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
FragmentModification stableIdentifier 1
FunctionalStatus stableIdentifier 1
PositiveRegulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
EntitySet stableIdentifier 1
URL stableIdentifier 1
_Release stableIdentifier 1
TranslationalModification stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
OpenSet stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Publication stableIdentifier 1
Affiliation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.