Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
AbstractModifiedResidue stableIdentifier 1
FragmentModification stableIdentifier 1
Person stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Regulation stableIdentifier 1
ReactionVertex stableIdentifier 1
Complex stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
FrontPage stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReactionCoordinates stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
InstanceEdit stableIdentifier 1
ReplacedResidue stableIdentifier 1
FunctionalStatusType stableIdentifier 1
TranslationalModification stableIdentifier 1
PathwayDiagram stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Figure stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ReferenceDatabase stableIdentifier 1
PsiMod stableIdentifier 1
DatabaseObject stableIdentifier 1
Compartment stableIdentifier 1
OtherEntity stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
OpenSet stableIdentifier 1
Requirement stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
ControlledVocabulary stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
EvidenceType stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
EntityVertex stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Publication stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Disease stableIdentifier 1
URL stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Species stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceEntity stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ReferenceGroup stableIdentifier 1
Pathway stableIdentifier 1
PhysicalEntity stableIdentifier 1
SimpleEntity stableIdentifier 1
Depolymerisation stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReferenceSequence stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityCompartment stableIdentifier 1
Polymerisation stableIdentifier 1
ExternalOntology stableIdentifier 1
Affiliation stableIdentifier 1
Edge stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Reaction stableIdentifier 1
Book stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
PositiveRegulation stableIdentifier 1
_Deleted stableIdentifier 1
Event stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Taxon stableIdentifier 1
ModifiedResidue stableIdentifier 1
CatalystActivity stableIdentifier 1
FunctionalStatus stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
_Release stableIdentifier 1
NegativeRegulation stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
EntitySet stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
StableIdentifier stableIdentifier 1
FailedReaction stableIdentifier 1
Polymer stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Vertex stableIdentifier 1
LiteratureReference stableIdentifier 1
PathwayVertex stableIdentifier 1
Summation stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
CandidateSet stableIdentifier 1
SequenceOntology stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.