Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Depolymerisation stableIdentifier 1
CandidateSet stableIdentifier 1
Figure stableIdentifier 1
DefinedSet stableIdentifier 1
SequenceOntology stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Taxon stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Publication stableIdentifier 1
PhysicalEntity stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ReferenceGroup stableIdentifier 1
PathwayCoordinates stableIdentifier 1
GO_CellularComponent stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Complex stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
DatabaseObject stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
PsiMod stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
Polymer stableIdentifier 1
LiteratureReference stableIdentifier 1
FunctionalStatus stableIdentifier 1
Event stableIdentifier 1
InstanceEdit stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
FrontPage stableIdentifier 1
ReferenceIsoform stableIdentifier 1
StableIdentifier stableIdentifier 1
Pathway stableIdentifier 1
OpenSet stableIdentifier 1
Polymerisation stableIdentifier 1
Edge stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ReferenceSequence stableIdentifier 1
_Release stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
FragmentModification stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ReplacedResidue stableIdentifier 1
ReactionVertex stableIdentifier 1
Summation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
OtherEntity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Affiliation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
NegativeRegulation stableIdentifier 1
ReferenceEntity stableIdentifier 1
_Deleted stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Person stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
TranslationalModification stableIdentifier 1
PathwayDiagram stableIdentifier 1
EvidenceType stableIdentifier 1
EntityCompartment stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Regulation stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Compartment stableIdentifier 1
PositiveRegulation stableIdentifier 1
Reaction stableIdentifier 1
PathwayVertex stableIdentifier 1
SimpleEntity stableIdentifier 1
URL stableIdentifier 1
CellType stableIdentifier 1
EntitySet stableIdentifier 1
FailedReaction stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
EntityVertex stableIdentifier 1
Vertex stableIdentifier 1
Requirement stableIdentifier 1
Disease stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Book stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Species stableIdentifier 1
ReferenceDatabase stableIdentifier 1
CatalystActivity stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.