Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Person stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Vertex stableIdentifier 1
NegativeRegulation stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Reaction stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceIsoform stableIdentifier 1
PsiMod stableIdentifier 1
PositiveRegulation stableIdentifier 1
Publication stableIdentifier 1
Regulation stableIdentifier 1
EntityVertex stableIdentifier 1
PathwayDiagram stableIdentifier 1
Species stableIdentifier 1
CandidateSet stableIdentifier 1
FailedReaction stableIdentifier 1
Compartment stableIdentifier 1
SimpleEntity stableIdentifier 1
Book stableIdentifier 1
EvidenceType stableIdentifier 1
LiteratureReference stableIdentifier 1
FrontPage stableIdentifier 1
InstanceEdit stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
CatalystActivity stableIdentifier 1
OtherEntity stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Depolymerisation stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
FragmentModification stableIdentifier 1
Affiliation stableIdentifier 1
URL stableIdentifier 1
Figure stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
Requirement stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReferenceGroup stableIdentifier 1
Disease stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceSequence stableIdentifier 1
Polymerisation stableIdentifier 1
Taxon stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
SequenceOntology stableIdentifier 1
PathwayVertex stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
ReactionVertex stableIdentifier 1
OpenSet stableIdentifier 1
Pathway stableIdentifier 1
EntityCompartment stableIdentifier 1
_Release stableIdentifier 1
ExternalOntology stableIdentifier 1
ReferenceMolecule stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Summation stableIdentifier 1
ReferenceEntity stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
DefinedSet stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceDatabase stableIdentifier 1
PathwayCoordinates stableIdentifier 1
_Deleted stableIdentifier 1
FunctionalStatus stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ControlledVocabulary stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
CellType stableIdentifier 1
Complex stableIdentifier 1
StableIdentifier stableIdentifier 1
Polymer stableIdentifier 1
Event stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReplacedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Edge stableIdentifier 1
EntitySet stableIdentifier 1
GO_CellularComponent stableIdentifier 1
DatabaseObject stableIdentifier 1
BlackBoxEvent stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.