Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PathwayVertex stableIdentifier 1
Compartment stableIdentifier 1
ReactionCoordinates stableIdentifier 1
BlackBoxEvent stableIdentifier 1
FrontPage stableIdentifier 1
ModifiedResidue stableIdentifier 1
EvidenceType stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Event stableIdentifier 1
CellType stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceGroup stableIdentifier 1
Polymer stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceSequence stableIdentifier 1
Complex stableIdentifier 1
ControlledVocabulary stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
OpenSet stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
_Deleted stableIdentifier 1
Depolymerisation stableIdentifier 1
PsiMod stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Vertex stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Reaction stableIdentifier 1
Requirement stableIdentifier 1
CatalystActivity stableIdentifier 1
DatabaseObject stableIdentifier 1
FunctionalStatus stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Summation stableIdentifier 1
CandidateSet stableIdentifier 1
ReactionVertex stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ReferenceEntity stableIdentifier 1
DefinedSet stableIdentifier 1
Pathway stableIdentifier 1
Affiliation stableIdentifier 1
PhysicalEntity stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Regulation stableIdentifier 1
PathwayDiagram stableIdentifier 1
ExternalOntology stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Polymerisation stableIdentifier 1
SequenceOntology stableIdentifier 1
Figure stableIdentifier 1
StableIdentifier stableIdentifier 1
Publication stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Book stableIdentifier 1
PositiveRegulation stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
NegativeRegulation stableIdentifier 1
EntityCompartment stableIdentifier 1
ReplacedResidue stableIdentifier 1
SimpleEntity stableIdentifier 1
OtherEntity stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Species stableIdentifier 1
Edge stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReferenceMolecule stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Taxon stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Disease stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
EntitySet stableIdentifier 1
TranslationalModification stableIdentifier 1
URL stableIdentifier 1
FragmentModification stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FailedReaction stableIdentifier 1
FunctionalStatusType stableIdentifier 1
EntityVertex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Person stableIdentifier 1
_Release stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.