Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ModifiedResidue stableIdentifier 1
Publication stableIdentifier 1
StableIdentifier stableIdentifier 1
Pathway stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Edge stableIdentifier 1
ReplacedResidue stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
EntityCompartment stableIdentifier 1
PhysicalEntity stableIdentifier 1
Reaction stableIdentifier 1
ReferenceGroup stableIdentifier 1
Polymerisation stableIdentifier 1
Vertex stableIdentifier 1
FailedReaction stableIdentifier 1
NegativeRegulation stableIdentifier 1
TranslationalModification stableIdentifier 1
Book stableIdentifier 1
EntitySet stableIdentifier 1
CellType stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
FragmentModification stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Polymer stableIdentifier 1
OpenSet stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
PathwayVertex stableIdentifier 1
FunctionalStatusType stableIdentifier 1
_Release stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReferenceSequence stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
CandidateSet stableIdentifier 1
OtherEntity stableIdentifier 1
ReferenceEntity stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FrontPage stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReferenceIsoform stableIdentifier 1
SimpleEntity stableIdentifier 1
Person stableIdentifier 1
BlackBoxEvent stableIdentifier 1
SequenceOntology stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
PositiveRegulation stableIdentifier 1
Taxon stableIdentifier 1
Regulation stableIdentifier 1
Depolymerisation stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Figure stableIdentifier 1
FunctionalStatus stableIdentifier 1
Compartment stableIdentifier 1
EntityVertex stableIdentifier 1
DefinedSet stableIdentifier 1
Requirement stableIdentifier 1
Summation stableIdentifier 1
EvidenceType stableIdentifier 1
URL stableIdentifier 1
ReactionVertex stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Complex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Species stableIdentifier 1
Event stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
InstanceEdit stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Disease stableIdentifier 1
CatalystActivity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
DatabaseObject stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceDatabase stableIdentifier 1
PathwayDiagram stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
_Deleted stableIdentifier 1
PsiMod stableIdentifier 1
ExternalOntology stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Affiliation stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
PathwayCoordinates stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReferenceMolecule stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.