Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
TranslationalModification stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
PathwayCoordinates stableIdentifier 1
PathwayDiagram stableIdentifier 1
SequenceOntology stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReplacedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
FailedReaction stableIdentifier 1
Regulation stableIdentifier 1
Reaction stableIdentifier 1
Polymer stableIdentifier 1
Complex stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReferenceEntity stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Person stableIdentifier 1
NegativeRegulation stableIdentifier 1
SimpleEntity stableIdentifier 1
ReferenceMolecule stableIdentifier 1
PositiveRegulation stableIdentifier 1
FunctionalStatusType stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Affiliation stableIdentifier 1
FunctionalStatus stableIdentifier 1
Species stableIdentifier 1
Taxon stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
EntityVertex stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Compartment stableIdentifier 1
FrontPage stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Vertex stableIdentifier 1
CatalystActivity stableIdentifier 1
Depolymerisation stableIdentifier 1
PsiMod stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
CandidateSet stableIdentifier 1
ReferenceSequence stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
EntitySet stableIdentifier 1
OtherEntity stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ReferenceGroup stableIdentifier 1
Figure stableIdentifier 1
URL stableIdentifier 1
DefinedSet stableIdentifier 1
ExternalOntology stableIdentifier 1
Requirement stableIdentifier 1
ReferenceDatabase stableIdentifier 1
EntityCompartment stableIdentifier 1
ReactionVertex stableIdentifier 1
Edge stableIdentifier 1
EvidenceType stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
DatabaseObject stableIdentifier 1
Pathway stableIdentifier 1
_Deleted stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
ModifiedResidue stableIdentifier 1
OpenSet stableIdentifier 1
StableIdentifier stableIdentifier 1
PathwayVertex stableIdentifier 1
Publication stableIdentifier 1
Summation stableIdentifier 1
Event stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ReferenceIsoform stableIdentifier 1
_Release stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Book stableIdentifier 1
InstanceEdit stableIdentifier 1
Polymerisation stableIdentifier 1
Disease stableIdentifier 1
FragmentModification stableIdentifier 1
LiteratureReference stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.