Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
IntraChainCrosslinkedResidue stableIdentifier 1
PhysicalEntity stableIdentifier 1
Edge stableIdentifier 1
Taxon stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReferenceIsoform stableIdentifier 1
CellType stableIdentifier 1
ReferenceMolecule stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Affiliation stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceDatabase stableIdentifier 1
FunctionalStatusType stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
PsiMod stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
NegativeRegulation stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Pathway stableIdentifier 1
ExternalOntology stableIdentifier 1
StableIdentifier stableIdentifier 1
_Release stableIdentifier 1
Publication stableIdentifier 1
Requirement stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Reaction stableIdentifier 1
ReactionCoordinates stableIdentifier 1
PathwayDiagram stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
BlackBoxEvent stableIdentifier 1
PathwayVertex stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
FailedReaction stableIdentifier 1
Figure stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Person stableIdentifier 1
OtherEntity stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Polymerisation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
DatabaseObject stableIdentifier 1
Complex stableIdentifier 1
InstanceEdit stableIdentifier 1
DefinedSet stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Summation stableIdentifier 1
TranslationalModification stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
FrontPage stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
URL stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
SequenceOntology stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Compartment stableIdentifier 1
_Deleted stableIdentifier 1
ControlledVocabulary stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
EntityVertex stableIdentifier 1
Regulation stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReferenceGroup stableIdentifier 1
LiteratureReference stableIdentifier 1
Book stableIdentifier 1
ReactionVertex stableIdentifier 1
CandidateSet stableIdentifier 1
PositiveRegulation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Depolymerisation stableIdentifier 1
Vertex stableIdentifier 1
SimpleEntity stableIdentifier 1
EntitySet stableIdentifier 1
OpenSet stableIdentifier 1
EvidenceType stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Species stableIdentifier 1
Polymer stableIdentifier 1
Disease stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
FunctionalStatus stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
ReplacedResidue stableIdentifier 1
FragmentModification stableIdentifier 1
EntityCompartment stableIdentifier 1
Event stableIdentifier 1
PathwayCoordinates stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.