Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
GroupModifiedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Requirement stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
FragmentModification stableIdentifier 1
ReactionVertex stableIdentifier 1
PsiMod stableIdentifier 1
EntityVertex stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Event stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceGroup stableIdentifier 1
EvidenceType stableIdentifier 1
Disease stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Species stableIdentifier 1
URL stableIdentifier 1
Book stableIdentifier 1
ReferenceSequence stableIdentifier 1
Taxon stableIdentifier 1
GO_CellularComponent stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Vertex stableIdentifier 1
SequenceOntology stableIdentifier 1
FrontPage stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
PositiveRegulation stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Figure stableIdentifier 1
Publication stableIdentifier 1
ReferenceDatabase stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Reaction stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
OtherEntity stableIdentifier 1
SimpleEntity stableIdentifier 1
ModifiedResidue stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
InstanceEdit stableIdentifier 1
OpenSet stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Regulation stableIdentifier 1
TranslationalModification stableIdentifier 1
Complex stableIdentifier 1
Depolymerisation stableIdentifier 1
CellType stableIdentifier 1
FunctionalStatus stableIdentifier 1
CatalystActivity stableIdentifier 1
FailedReaction stableIdentifier 1
ReferenceIsoform stableIdentifier 1
NegativeRegulation stableIdentifier 1
Person stableIdentifier 1
Pathway stableIdentifier 1
_Deleted stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Affiliation stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Compartment stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ExternalOntology stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
_Release stableIdentifier 1
StableIdentifier stableIdentifier 1
DefinedSet stableIdentifier 1
CandidateSet stableIdentifier 1
DatabaseObject stableIdentifier 1
Summation stableIdentifier 1
Edge stableIdentifier 1
ReactionCoordinates stableIdentifier 1
EntityCompartment stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Polymerisation stableIdentifier 1
EntitySet stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceMolecule stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReplacedResidue stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Polymer stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.