Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Requirement stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Figure stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceGroup stableIdentifier 1
SimpleEntity stableIdentifier 1
ExternalOntology stableIdentifier 1
FrontPage stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
URL stableIdentifier 1
FunctionalStatus stableIdentifier 1
PhysicalEntity stableIdentifier 1
EntitySet stableIdentifier 1
Depolymerisation stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Polymer stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Pathway stableIdentifier 1
Vertex stableIdentifier 1
ReferenceEntity stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
OpenSet stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Book stableIdentifier 1
InstanceEdit stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EntityVertex stableIdentifier 1
LiteratureReference stableIdentifier 1
Taxon stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
TranslationalModification stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
StableIdentifier stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
_Release stableIdentifier 1
ModifiedResidue stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
_Deleted stableIdentifier 1
OtherEntity stableIdentifier 1
EvidenceType stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Compartment stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
DatabaseObject stableIdentifier 1
Polymerisation stableIdentifier 1
ReplacedResidue stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Publication stableIdentifier 1
ReactionVertex stableIdentifier 1
Species stableIdentifier 1
Regulation stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
CandidateSet stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
PathwayVertex stableIdentifier 1
Event stableIdentifier 1
Person stableIdentifier 1
Edge stableIdentifier 1
Disease stableIdentifier 1
Complex stableIdentifier 1
SequenceOntology stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ReferenceIsoform stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
FunctionalStatusType stableIdentifier 1
PositiveRegulation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Reaction stableIdentifier 1
FailedReaction stableIdentifier 1
FragmentModification stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
NegativeRegulation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
PathwayCoordinates stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
CatalystActivity stableIdentifier 1
Summation stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.