Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
EntityCompartment stableIdentifier 1
Regulation stableIdentifier 1
Species stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Person stableIdentifier 1
PsiMod stableIdentifier 1
PathwayDiagram stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
PositiveRegulation stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Polymerisation stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
FragmentModification stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FailedReaction stableIdentifier 1
Book stableIdentifier 1
Taxon stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReactionVertex stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Depolymerisation stableIdentifier 1
PathwayCoordinates stableIdentifier 1
InstanceEdit stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
OpenSet stableIdentifier 1
OtherEntity stableIdentifier 1
FrontPage stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Complex stableIdentifier 1
Event stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
DefinedSet stableIdentifier 1
URL stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
BlackBoxEvent stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
PhysicalEntity stableIdentifier 1
Vertex stableIdentifier 1
EntitySet stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceDatabase stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ModifiedResidue stableIdentifier 1
Polymer stableIdentifier 1
Disease stableIdentifier 1
Edge stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PathwayVertex stableIdentifier 1
Figure stableIdentifier 1
SimpleEntity stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
CellType stableIdentifier 1
Compartment stableIdentifier 1
ExternalOntology stableIdentifier 1
_Deleted stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Requirement stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
DatabaseObject stableIdentifier 1
ReplacedResidue stableIdentifier 1
Reaction stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Affiliation stableIdentifier 1
LiteratureReference stableIdentifier 1
SequenceOntology stableIdentifier 1
StableIdentifier stableIdentifier 1
ReferenceGroup stableIdentifier 1
NegativeRegulation stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
EvidenceType stableIdentifier 1
_Release stableIdentifier 1
CandidateSet stableIdentifier 1
EntityVertex stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
FunctionalStatus stableIdentifier 1
CatalystActivity stableIdentifier 1
Pathway stableIdentifier 1
Publication stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Summation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ReferenceSequence stableIdentifier 1
GroupModifiedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.