Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PathwayCoordinates stableIdentifier 1
Pathway stableIdentifier 1
StableIdentifier stableIdentifier 1
Publication stableIdentifier 1
Person stableIdentifier 1
ReferenceDatabase stableIdentifier 1
CellType stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Reaction stableIdentifier 1
FrontPage stableIdentifier 1
_Deleted stableIdentifier 1
URL stableIdentifier 1
Summation stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
TranslationalModification stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SimpleEntity stableIdentifier 1
Polymer stableIdentifier 1
LiteratureReference stableIdentifier 1
CandidateSet stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Polymerisation stableIdentifier 1
OpenSet stableIdentifier 1
DefinedSet stableIdentifier 1
Depolymerisation stableIdentifier 1
ReplacedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Affiliation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
PathwayVertex stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
EntitySet stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Taxon stableIdentifier 1
EntityCompartment stableIdentifier 1
PsiMod stableIdentifier 1
Disease stableIdentifier 1
EvidenceType stableIdentifier 1
DatabaseObject stableIdentifier 1
CatalystActivity stableIdentifier 1
BlackBoxEvent stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ModifiedResidue stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
OtherEntity stableIdentifier 1
PathwayDiagram stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Vertex stableIdentifier 1
Regulation stableIdentifier 1
ReferenceSequence stableIdentifier 1
Edge stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
InstanceEdit stableIdentifier 1
FunctionalStatusType stableIdentifier 1
FunctionalStatus stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Complex stableIdentifier 1
PositiveRegulation stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceGroup stableIdentifier 1
Figure stableIdentifier 1
NegativeRegulation stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReactionVertex stableIdentifier 1
FailedReaction stableIdentifier 1
SequenceOntology stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Species stableIdentifier 1
Compartment stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Book stableIdentifier 1
FragmentModification stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Event stableIdentifier 1
EntityVertex stableIdentifier 1
Requirement stableIdentifier 1
_Release stableIdentifier 1
ReferenceIsoform stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.