Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Edge stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Figure stableIdentifier 1
Depolymerisation stableIdentifier 1
FrontPage stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
_Deleted stableIdentifier 1
StableIdentifier stableIdentifier 1
GO_CellularComponent stableIdentifier 1
_Release stableIdentifier 1
EvidenceType stableIdentifier 1
OtherEntity stableIdentifier 1
PathwayDiagram stableIdentifier 1
PositiveRegulation stableIdentifier 1
EntitySet stableIdentifier 1
NegativeRegulation stableIdentifier 1
ExternalOntology stableIdentifier 1
Complex stableIdentifier 1
Polymerisation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Reaction stableIdentifier 1
Vertex stableIdentifier 1
CatalystActivity stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Regulation stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Event stableIdentifier 1
CellType stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReferenceIsoform stableIdentifier 1
EntityCompartment stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Compartment stableIdentifier 1
ReferenceEntity stableIdentifier 1
FailedReaction stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Person stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Summation stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
SimpleEntity stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
PathwayCoordinates stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
SequenceOntology stableIdentifier 1
Species stableIdentifier 1
ReferenceGroup stableIdentifier 1
LiteratureReference stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
TranslationalModification stableIdentifier 1
Publication stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceSequence stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Affiliation stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceMolecule stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
CandidateSet stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Polymer stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Taxon stableIdentifier 1
FunctionalStatus stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Book stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
OpenSet stableIdentifier 1
PhysicalEntity stableIdentifier 1
Disease stableIdentifier 1
ReactionVertex stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
PsiMod stableIdentifier 1
EntityVertex stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Requirement stableIdentifier 1
FragmentModification stableIdentifier 1
DatabaseObject stableIdentifier 1
URL stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReactionCoordinates stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Pathway stableIdentifier 1
DefinedSet stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ReplacedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.