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aly-3 [nucleoplasm]
Stable Identifier
R-CEL-156649
Type
Protein [EntityWithAccessionedSequence]
Species
Caenorhabditis elegans
Compartment
nucleoplasm
Synonyms
ALYREF, Q21559
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Caenorhabditis elegans)
RNA Polymerase II Transcription (Caenorhabditis elegans)
RNA Polymerase II Transcription Termination (Caenorhabditis elegans)
Cleavage of mRNA at the 3'-end (Caenorhabditis elegans)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Metabolism of RNA (Caenorhabditis elegans)
Processing of Capped Intron-Containing Pre-mRNA (Caenorhabditis elegans)
Transport of Mature Transcript to Cytoplasm (Caenorhabditis elegans)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Caenorhabditis elegans)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Caenorhabditis elegans)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Caenorhabditis elegans)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (minus DDX39B) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of Mature mRNAs Derived from Intronless Transcripts (Caenorhabditis elegans)
Transport of Mature mRNA Derived from an Intronless Transcript (Caenorhabditis elegans)
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC (Caenorhabditis elegans)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of the Mature intronless transcript derived mRNA:TAP:Aly/Ref Complex through the NPC (Caenorhabditis elegans)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of the SLBP Dependant Mature mRNA (Caenorhabditis elegans)
Docking of Mature Replication Dependent Histone mRNA with the NPC (Caenorhabditis elegans)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of the Mature IntronlessTranscript Derived Histone mRNA:SLBP:TAP:Aly/Ref complex through the NPC (Caenorhabditis elegans)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of the SLBP independent Mature mRNA (Caenorhabditis elegans)
Docking of Mature Histone mRNA complex:TAP at the NPC (Caenorhabditis elegans)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Transport of the Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref Complex through the NPC (Caenorhabditis elegans)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
mRNA 3'-end processing (Caenorhabditis elegans)
Cleavage of mRNA at the 3'-end (Caenorhabditis elegans)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
mRNA polyadenylation (Caenorhabditis elegans)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Caenorhabditis elegans)
EJC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
TREX (DDX39B:ATP) [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
mRNA Splicing (Caenorhabditis elegans)
mRNA Splicing - Major Pathway (Caenorhabditis elegans)
Formation of Exon Junction Complex (Caenorhabditis elegans)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Formation of an intermediate Spliceosomal C (Bact) complex (Caenorhabditis elegans)
Spliceosomal B Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Formation of the Spliceosomal B Complex (Caenorhabditis elegans)
Spliceosomal A Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal B Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Formation of the active Spliceosomal C (B*) complex (Caenorhabditis elegans)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Lariat Formation and 5'-Splice Site Cleavage (Caenorhabditis elegans)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Caenorhabditis elegans)
aly-3 [nucleoplasm] (Caenorhabditis elegans)
External Reference Information
External Reference
UniProt:Q21559
Gene Names
aly-3
Reference Genes
BioGPS Gene:178157 aly-3
ENSEMBL:WBGene00000122
KEGG Gene (Caenorhabditis elegans):CELE_M18.7 aly-3
Monarch:178157 aly-3
NCBI Gene:178157 aly-3
UCSC:Q21559 aly-3
Wormbase:WBGene00000122
Reference Transcript
RefSeq:NM_001083228.2 aly-3
Other Identifiers
178157
18540886
18635287
193709_at
A_12_P147690
CE06198
CE_WBGene00000122_A
CE_WBGene00000122_B
CE_WBGene00000122_C
CGZ0011778
CGZ0030225
GO:0003674
GO:0003676
GO:0003723
M18.7
M18.7a_149-208_0.918_6_C
M18.7a_228-287_0.928_4_B
M18.7a_663-722_0.947_1_A
M18_7aP00206
M18_7aP00549
M18_7aP00556
WBGene00000122
cea2.c.30515
Participant Of
input
Docking of Mature Histone mRNA complex:TAP at the NPC
Docking of Mature Replication Dependent Histone mRNA with the NPC
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC
hasComponent
EJC [nucleoplasm]
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm]
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm]
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm]
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliceosomal A Complex [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal E Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
TREX (DDX39B:ATP) [nucleoplasm]
TREX (minus DDX39B) [nucleoplasm]
Other forms of this molecule
aly-3 [nucleoplasm]
aly-3 [cytosol]
Inferred From
ALYREF [nucleoplasm] (Homo sapiens)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Homo sapiens)
Cross References
RefSeq
NP_001076697.1
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