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CDK9 [nucleoplasm]
Stable Identifier
R-CEL-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Caenorhabditis elegans
Compartment
nucleoplasm
Synonyms
Q9TVL3
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Caenorhabditis elegans)
RNA Polymerase II Transcription (Caenorhabditis elegans)
Generic Transcription Pathway (Caenorhabditis elegans)
Transcriptional Regulation by TP53 (Caenorhabditis elegans)
TP53 Regulates Transcription of DNA Repair Genes (Caenorhabditis elegans)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Caenorhabditis elegans)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Caenorhabditis elegans)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Caenorhabditis elegans)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Caenorhabditis elegans)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Caenorhabditis elegans)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Caenorhabditis elegans)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Caenorhabditis elegans)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Caenorhabditis elegans)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Caenorhabditis elegans)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Caenorhabditis elegans)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Caenorhabditis elegans)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Caenorhabditis elegans)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA Polymerase II Pre-transcription Events (Caenorhabditis elegans)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Caenorhabditis elegans)
Paused processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Abortive termination of elongation after arrest (Caenorhabditis elegans)
Aborted elongation complex after arrest [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Formation of P-TEFb complex (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Resumption of elongation after recovery from pausing (Caenorhabditis elegans)
Paused processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
TFIIS-mediated recovery of elongation from arrest (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA Polymerase II Transcription Elongation (Caenorhabditis elegans)
Addition of nucleotides leads to transcript elongation (Caenorhabditis elegans)
Elongation complex [nucleoplasm] (Caenorhabditis elegans)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Formation of RNA Pol II elongation complex (Caenorhabditis elegans)
Recruitment of elongation factors to form elongation complex (Caenorhabditis elegans)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Elongation complex [nucleoplasm] (Caenorhabditis elegans)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Pol II elongation complex moves on the template as transcript elongates (Caenorhabditis elegans)
Elongation complex prior to separation [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Processive elongation complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Separation of elongating transcript from template (Caenorhabditis elegans)
Elongation complex prior to separation [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II transcribes snRNA genes (Caenorhabditis elegans)
CBCAP complex binds 7-methylguanosine cap of snRNA (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Integrator complex processes the 3' end of snRNA (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Pre-snRNA is elongated and capped with 7-methylguanosine (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Caenorhabditis elegans)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Caenorhabditis elegans)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Signal Transduction (Caenorhabditis elegans)
Signaling by Nuclear Receptors (Caenorhabditis elegans)
ESR-mediated signaling (Caenorhabditis elegans)
Estrogen-dependent gene expression (Caenorhabditis elegans)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Caenorhabditis elegans)
ESR1:ESTG:P-TEFb [nucleoplasm] (Caenorhabditis elegans)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Caenorhabditis elegans)
ESR1:ESTG:P-TEFb [nucleoplasm] (Caenorhabditis elegans)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
Signaling by TGFB family members (Caenorhabditis elegans)
Signaling by TGF-beta Receptor Complex (Caenorhabditis elegans)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Caenorhabditis elegans)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Caenorhabditis elegans)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Caenorhabditis elegans)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
CDK9 [nucleoplasm] (Caenorhabditis elegans)
External Reference Information
External Reference
UniProt:Q9TVL3
Reference Genes
BioGPS Gene:173023
ENSEMBL:WBGene00000410
Monarch:173023
NCBI Gene:173023
UCSC:Q9TVL3
Wormbase:WBGene00000410
Reference Transcript
RefSeq:NM_060505.3
RefSeq:NM_060506.3
Other Identifiers
173023
18457459
193890_s_at
A_12_P105796
A_12_P112232
A_12_P149590
A_12_P158920
A_12_P158921
CE18824
CE23826
CE_WBGene00000410_A
CE_WBGene00000410_B
CGZ0026743
CGZ0026744
GO:0003824
GO:0004672
GO:0005524
GO:0006468
GO:0016740
GO:0036211
GO:0140096
H25P06.2
H25P06.2a
H25P06.2b
H25P06.2b_1231-1290_0.924_4_A
H25P06.2b_1387-1446_0.925_3_B
H25P06.2b_829-888_0.914_7_C
H25P06_2aP00032
H25P06_2aP00204
H25P06_2aP01106
H25P06_2bP01363
H25P06_2bP01371
WBGene00000410
cea2.d.31447
cea2.p.13253
Participates
as an input of
Formation of P-TEFb complex (Caenorhabditis elegans)
as a component of
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Caenorhabditis elegans)
P-TEFb complex [nucleoplasm] (Caenorhabditis elegans)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_492906.2
,
NP_492907.2
IntEnz
2.7.11.22
PRO
Q9TVL3
Interactors (1)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q17549 Q17549
0.488
2
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