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syf-1 [nucleoplasm]
Stable Identifier
R-CEL-67411
Type
Protein [EntityWithAccessionedSequence]
Species
Caenorhabditis elegans
Compartment
nucleoplasm
Synonyms
XAB2, P91175
Locations in the PathwayBrowser
Expand all
DNA Repair (Caenorhabditis elegans)
Nucleotide Excision Repair (Caenorhabditis elegans)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Caenorhabditis elegans)
Dual incision in TC-NER (Caenorhabditis elegans)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Caenorhabditis elegans)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Formation of TC-NER Pre-Incision Complex (Caenorhabditis elegans)
Assembly of the pre-incision complex in TC-NER (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
UVSSA:USP7 deubiquitinates ERCC6 (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Gap-filling DNA repair synthesis and ligation in TC-NER (Caenorhabditis elegans)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Caenorhabditis elegans)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Caenorhabditis elegans)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Metabolism of RNA (Caenorhabditis elegans)
Processing of Capped Intron-Containing Pre-mRNA (Caenorhabditis elegans)
mRNA Splicing (Caenorhabditis elegans)
mRNA Splicing - Major Pathway (Caenorhabditis elegans)
Formation of the Spliceosomal C complex containing intron lariat (Caenorhabditis elegans)
Spliceosomal B* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal C complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Formation of the Spliceosomal C* complex (Caenorhabditis elegans)
Spliceosomal C complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal C* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Formation of the Spliceosomal P complex and exon ligation (Caenorhabditis elegans)
Spliceosomal C* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal P complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
syf-1 [nucleoplasm] (Caenorhabditis elegans)
External Reference Information
External Reference
UniProt:P91175
Gene Names
syf-1
Reference Genes
BioGPS Gene:171970 syf-1
ENSEMBL:WBGene00016837
KEGG:cel:CELE_C50F2.3 syf-1
Monarch:171970 syf-1
NCBI Gene:171970 syf-1
UCSC:P91175 syf-1
Wormbase:WBGene00016837
Reference Transcript
RefSeq:NM_058849.6 syf-1
Other Identifiers
171970
182535_at
18453151
A_12_P119443
C50F2.3
C50F2.3_1931-1990_0.909_18_C
C50F2.3_2141-2200_0.921_7_B
C50F2.3_2211-2270_0.942_3_A
C50F2_3P01244
C50F2_3P01601
C50F2_3P01865
CE08909
CE_WBGene00016837_A
CE_WBGene00016837_C
CGZ0009984
GO:0000349
GO:0000398
GO:0000974
GO:0005515
GO:0005634
GO:0005681
GO:0006396
GO:0016071
GO:0043226
GO:0065003
GO:0071007
GO:0071014
WBGene00016837
cea2.p.05362
Participates
as a component of
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
Inferred From
XAB2 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_491250.1
ENSEMBL
C50F2.3.1
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