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phospho-ama-1 [nucleoplasm]
Stable Identifier
R-CEL-6781855
Type
Protein [EntityWithAccessionedSequence]
Species
Caenorhabditis elegans
Compartment
nucleoplasm
Synonyms
Ub,p-S2,S5-POLR2A, P16356
Locations in the PathwayBrowser
Expand all
DNA Repair (Caenorhabditis elegans)
Nucleotide Excision Repair (Caenorhabditis elegans)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Caenorhabditis elegans)
Dual incision in TC-NER (Caenorhabditis elegans)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Caenorhabditis elegans)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
Formation of TC-NER Pre-Incision Complex (Caenorhabditis elegans)
ERCC8:DDB1:CUL4:RBX1 ubiquitinates ERCC6 and RNA Pol II (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
UVSSA:USP7 deubiquitinates ERCC6 (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
Gap-filling DNA repair synthesis and ligation in TC-NER (Caenorhabditis elegans)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Caenorhabditis elegans)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm] (Caenorhabditis elegans)
phospho-ama-1 [nucleoplasm] (Caenorhabditis elegans)
External Reference Information
External Reference
UniProt:P16356
Gene Names
ama-1
Reference Genes
BioGPS Gene:177190 ama-1
ENSEMBL:WBGene00000123
KEGG Gene (Caenorhabditis elegans):CELE_F36A4.7 ama-1
Monarch:177190 ama-1
NCBI Gene:177190 ama-1
UCSC:P16356 ama-1
Wormbase:WBGene00000123
Reference Transcript
RefSeq:NM_068122.6 ama-1
Other Identifiers
177190
18537760
191893_s_at
A_12_P112899
CE28300
CE_WBGene00000123_A
CE_WBGene00000123_B
CE_WBGene00000123_C
CGZ0019925
F36A4.7
F36A4.7_3911-3970_0.837_10_B
F36A4.7_4087-4146_0.829_12_C
F36A4.7_5533-5592_0.963_1_A
F36A4_7P04202
F36A4_7P04513
F36A4_7P05403
GO:0001055
GO:0003674
GO:0003677
GO:0003899
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005665
GO:0005694
GO:0006351
GO:0006366
GO:0007369
GO:0008150
GO:0009058
GO:0009790
GO:0009792
GO:0016740
GO:0016779
GO:0032991
GO:0034641
GO:0035327
GO:0042789
GO:0043167
GO:0043226
GO:0045893
GO:0046872
GO:0048856
GO:2000543
WBGene00000123
cea2.p.91959
Participant Of
hasComponent
Ubiquitinated RNA Polymerase II holoenzyme complex (hyperphosphorylated) [nucleoplasm]
Other forms of this molecule
phospho-ama-1 [nucleoplasm]
phospho-ama-1 [nucleoplasm]
phospho-ama-1 [nucleoplasm]
ama-1 [nucleoplasm]
phospho-ama-1 [nucleoplasm]
phospho-ama-1 [nucleoplasm]
Inferred From
Ub,p-S2,S5-POLR2A [nucleoplasm] (Homo sapiens)
Modified Residues
Name
O-phospho-L-serine at 5 (in Homo sapiens)
Coordinate
5
PsiMod Name
O-phospho-L-serine [MOD:00046]
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O-phospho-L-serine.
Name
O-phospho-L-serine at 2 (in Homo sapiens)
Coordinate
2
PsiMod Name
O-phospho-L-serine [MOD:00046]
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O-phospho-L-serine.
Name
ubiquitinylated lysine at unknown position
PsiMod Name
ubiquitinylated lysine [MOD:01148]
PsiMod Definition
A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a ubiquitin.
Cross References
RefSeq
NP_500523.4
PRO
P16356
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