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emb-4 [nucleoplasm]
Stable Identifier
R-CEL-6781960
Type
Protein [EntityWithAccessionedSequence]
Species
Caenorhabditis elegans
Compartment
nucleoplasm
Synonyms
AQR, Q9U1Q7
Locations in the PathwayBrowser
Expand all
DNA Repair (Caenorhabditis elegans)
Nucleotide Excision Repair (Caenorhabditis elegans)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Caenorhabditis elegans)
Dual incision in TC-NER (Caenorhabditis elegans)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Caenorhabditis elegans)
TC-NER incision complex [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Caenorhabditis elegans)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Caenorhabditis elegans)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Formation of TC-NER Pre-Incision Complex (Caenorhabditis elegans)
Assembly of the pre-incision complex in TC-NER (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
UVSSA:USP7 deubiquitinates ERCC6 (Caenorhabditis elegans)
TC-NER pre-incision complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Gap-filling DNA repair synthesis and ligation in TC-NER (Caenorhabditis elegans)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Caenorhabditis elegans)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Caenorhabditis elegans)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Metabolism of RNA (Caenorhabditis elegans)
Processing of Capped Intron-Containing Pre-mRNA (Caenorhabditis elegans)
mRNA Splicing (Caenorhabditis elegans)
mRNA Splicing - Major Pathway (Caenorhabditis elegans)
Formation of the Spliceosomal C complex containing intron lariat (Caenorhabditis elegans)
Spliceosomal B* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal C complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Formation of the Spliceosomal C* complex (Caenorhabditis elegans)
Spliceosomal C complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal C* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Formation of the Spliceosomal P complex and exon ligation (Caenorhabditis elegans)
Spliceosomal C* complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
Spliceosomal P complex [nucleoplasm] (Caenorhabditis elegans)
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
emb-4 [nucleoplasm] (Caenorhabditis elegans)
External Reference Information
External Reference
UniProt:Q9U1Q7
Gene Names
emb-4
Reference Genes
BioGPS Gene:180232 emb-4
CTD Gene:180232 emb-4
ENSEMBL:WBGene00001258
KEGG:cel:CELE_Y80D3A.2 emb-4
Monarch:180232 emb-4
NCBI Gene:180232 emb-4
UCSC:Q9U1Q7 emb-4
Wormbase:WBGene00001258
Reference Transcript
RefSeq:NM_001269902.1 emb-4
Other Identifiers
180232
182742_at
18601021
A_12_P110006
A_12_P173783
A_12_P175247
A_12_P175248
CE32762
CE_WBGene00001258_A
CGZ0055142
GO:0000398
GO:0003723
GO:0003729
GO:0003824
GO:0004386
GO:0005634
GO:0005681
GO:0006397
GO:0008380
GO:0016071
GO:0043226
GO:0071013
GO:0140657
WBGene00001258
Y80D3A.2
Y80D3A.2_4130-4189_0.943_2_B
Y80D3A.2_4224-4283_0.943_3_C
Y80D3A.2_4352-4411_0.967_1_A
Y80D3A_2P02955
Y80D3A_2P03553
Y80D3A_2P03809
cea2.p.130105
Participates
as a component of
PRP19-CDC5L related complex [nucleoplasm] (Caenorhabditis elegans)
XAB2 complex [nucleoplasm] (Caenorhabditis elegans)
Inferred From
AQR [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001256831.1
ENSEMBL
Y80D3A.2a.1
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