trimmed unfolded N-glycan Spike [endoplasmic reticulum lumen]

Stable Identifier
R-COV-9683716
Type
Protein [EntityWithAccessionedSequence]
Species
Human SARS coronavirus
Compartment
endoplasmic reticulum lumen
Locations in the PathwayBrowser for interactor UniProt:P59596
Expand all
Literature References
PubMed ID Title Journal Year
16122388 The SARS coronavirus S glycoprotein receptor binding domain: fine mapping and functional characterization

Chakraborti, S, Prabakaran, P, Xiao, X, Dimitrov, DS

Virol. J. 2005
12775768 Mass spectrometric characterization of proteins from the SARS virus: a preliminary report

Krokhin, O, Li, Y, Andonov, A, Feldmann, H, Flick, R, Jones, S, Stroeher, U, Bastien, N, Dasuri, KV, Cheng, K, Simonsen, JN, Perreault, H, Wilkins, J, Ens, W, Plummer, F, Standing, KG

Mol. Cell Proteomics 2003
20129637 Identification of N-linked carbohydrates from severe acute respiratory syndrome (SARS) spike glycoprotein

Ritchie, G, Harvey, DJ, Feldmann, F, Stroeher, U, Feldmann, H, Royle, L, Dwek, RA, Rudd, PM

Virology 2010
15253436 Proteomic analysis of SARS associated coronavirus using two-dimensional liquid chromatography mass spectrometry and one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by mass spectroemtric analysis

Zeng, R, Ruan, HQ, Jiang, XS, Zhou, H, Shi, L, Zhang, L, Sheng, QH, Tu, Q, Xia, QC, Wu, JR

J. Proteome Res. 2004
14760722 Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus

Ying, W, Hao, Y, Zhang, Y, Peng, W, Qin, E, Cai, Y, Wei, K, Wang, J, Chang, G, Sun, W, Dai, S, Li, X, Zhu, Y, Li, J, Wu, S, Guo, L, Dai, J, Wang, J, Wan, P, Chen, T, Du, C, Li, D, Wan, J, Kuai, X, Li, W, Shi, R, Wei, H, Cao, C, Yu, M, Liu, H, Dong, F, Wang, D, Zhang, X, Qian, X, Zhu, Q, He, F

Proteomics 2004
17715238 Specific asparagine-linked glycosylation sites are critical for DC-SIGN- and L-SIGN-mediated severe acute respiratory syndrome coronavirus entry

Han, DP, Lohani, M, Cho, MW

J. Virol. 2007
External Reference Information
External Reference
UniProt:P59594 S
Gene Names
S, 2
Chain
signal peptide:1-13, chain:14-1255, chain:14-667, chain:668-1255, chain:798-1255
Reference Genes
BioGPS Gene:1489668 S
KEGG Gene (Hepatitis C Virus):1489668 S
Monarch:1489668 S
NCBI Gene:1489668 S
Reference Transcript
Participates
as an output of
as an input of
Other forms of this molecule
complex N-glycan-PALM-Spike S2 Fragment [endocytic vesicle membrane]
complex N-glycan-PALM-Spike S1 Fragment [endocytic vesicle membrane]
complex N-glycan-PALM-Spike S1 Fragment [virion membrane]
complex N-glycan-PALM-Spike S2 Fragment [virion membrane]
nascent Spike [endoplasmic reticulum lumen]
N-glycan Spike [endoplasmic reticulum lumen]
trimmed N-glycan Spike [endoplasmic reticulum lumen]
trimmed N-glycan-PALM-Spike [endoplasmic reticulum lumen]
trimmed N-glycan-PALM-Spike [endoplasmic reticulum-Golgi intermediate compartment]
complex N-glycan-PALM-Spike [endoplasmic reticulum-Golgi intermediate compartment]
complex N-glycan-PALM-Spike [virion membrane]
Modified Residues
Name
N-glycosylated residue at 1056
Coordinate
1056
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 1080
Coordinate
1080
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 109
Coordinate
109
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 1140
Coordinate
1140
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 1155
Coordinate
1155
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 1176
Coordinate
1176
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 118
Coordinate
118
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 119
Coordinate
119
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 158
Coordinate
158
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 227
Coordinate
227
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 269
Coordinate
269
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 318
Coordinate
318
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 330
Coordinate
330
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 357
Coordinate
357
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 589
Coordinate
589
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 699
Coordinate
699
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Name
N-glycosylated residue at 783
Coordinate
783
PsiMod Name
N-glycosylated residue
PsiMod Definition
A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
Disease
Name Identifier Synonyms
severe acute respiratory syndrome DOID:2945 SARS-CoV infection, SARS
Cross References
RefSeq
PDB
Interactors (10)
Accession #Entities Entities Confidence Score Evidence (IntAct)
 UniProt:Q9BYF1 ACE2  5 0.986 48
 UniProt:P59594 S  12 0.933 22
 UniProt:Q56NL1 ACE2      0.667 4
 UniProt:P59635 7a  3 0.646 3
 UniProt:O00303 EIF3F  1 0.645 5
 UniProt:Q5EGZ1  1 0.524 2
 UniProt:P59637 E  9 0.491 2
 UniProt:P59596 M  8 0.463 2
 UniProt:P84198 VIME      0.463 2
 UniProt:Q1LZX8 Q1LZX8      0.462 2
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