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col6a1 [endoplasmic reticulum lumen]
Stable Identifier
R-DRE-2022997
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
endoplasmic reticulum lumen
Synonyms
5Hyl-COL6A1, F1Q6P3
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Danio rerio)
Collagen formation (Danio rerio)
Collagen biosynthesis and modifying enzymes (Danio rerio)
COLGALT1,COLGALT2 bind Lysyl hydroxylated collagen propeptides (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by PLOD3 (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by procollagen galactosyltransferases 1, 2. (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides dissociate from Lysyl hydroxylases (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
PLOD3 binds Lysyl hydroxylated collagen propeptides (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
Procollagen lysyl hydroxylases convert collagen lysines to 5-hydroxylysines (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
col6a1 [endoplasmic reticulum lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:F1Q6P3
Gene Names
col6a1
Reference Genes
BioGPS Gene:569755 col6a1
ENSEMBL:ENSDARG00000074908
KEGG Gene (Danio rerio):569755 col6a1
Monarch:569755 col6a1
NCBI Gene:569755 col6a1
Reference Transcript
RefSeq:XM_009306169.2 col6a1
Other Identifiers
12980783
569755
A_15_P265756
A_15_P752311
CUST_1315_PI428451953
DRER18644
ENSDART00000110608
GT_Spec_XM_693161.5_358485
XM_693161
Participates
as a candidate of
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Other forms of this molecule
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
col6a1 [endoplasmic reticulum lumen]
Inferred From
5Hyl-COL6A1 [endoplasmic reticulum lumen]
(Homo sapiens)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
XP_009304444.1
Ensembl
ENSDARG00000074908
,
ENSDARP00000103794
,
ENSDART00000110608
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