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zgc:63840 [nucleoplasm]
Stable Identifier
R-DRE-53489
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
DDB1, Q6PGT6
Locations in the PathwayBrowser
Expand all
DNA Repair (Danio rerio)
Nucleotide Excision Repair (Danio rerio)
Global Genome Nucleotide Excision Repair (GG-NER) (Danio rerio)
DNA Damage Recognition in GG-NER (Danio rerio)
PARP1 or PARP2 PARylates DDB2 and autoPARylates (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:UV-DDB:PARP1,PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:UV-DDB [nucleoplasm] (Danio rerio)
UV-DDB [nucleoplasm] (Danio rerio)
DDB1:DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
PARP1 or PARP2 binds DDB2 at GG-NER site (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:UV-DDB [nucleoplasm] (Danio rerio)
UV-DDB [nucleoplasm] (Danio rerio)
DDB1:DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:UV-DDB:PARP1,PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:UV-DDB [nucleoplasm] (Danio rerio)
UV-DDB [nucleoplasm] (Danio rerio)
DDB1:DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Dual Incision in GG-NER (Danio rerio)
5'- incision of DNA by ERCC1:ERCC4 in GG-NER (Danio rerio)
GG-NER incision complex:5'-incised damaged DNA [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
GG-NER incision complex:Open bubble dsDNA [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Formation of Incision Complex in GG-NER (Danio rerio)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in GG-NER (Danio rerio)
GG-NER incision complex:Open bubble dsDNA [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
CHD1L is recruited to GG-NER site (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
ERCC2 and ERCC3 DNA helicases form an open bubble structure in damaged DNA (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Open bubble-dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
TFIIH binds GG-NER site to form a verification complex (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Danio rerio)
Dual incision in TC-NER (Danio rerio)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Danio rerio)
TC-NER incision complex [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Danio rerio)
TC-NER incision complex [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Danio rerio)
TC-NER pre-incision complex [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Danio rerio)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Partially open bubble damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Formation of TC-NER Pre-Incision Complex (Danio rerio)
UVSSA:USP7 deubiquitinates ERCC6 (Danio rerio)
TC-NER pre-incision complex [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Danio rerio)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
Metabolism of proteins (Danio rerio)
Post-translational protein modification (Danio rerio)
Neddylation (Danio rerio)
CAND1 binds CRL4 E3 ubiquitin ligase in the nucleus (Danio rerio)
CRL4 E3 ubiquitin ligase:CAND1 [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
COMMDs displace CAND1 from CRL4 E3 ubiquitin ligase complex (Danio rerio)
CRL4 E3 ubiquitin ligase:CAND1 [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
CRL4 E3 ubiquitin ligase:COMMDs:CCDC22 [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex (Danio rerio)
CRL4 E3 ubiquitin ligase:COMMDs:CCDC22:DCUN1D1,2,4,5 [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
NEDD8-CRL4 E3 ubiquitin ligase:COMMDs:CCDC22:DCUN1D1,2,4,5 [nucleoplasm] (Danio rerio)
NEDD8-CRL4 E3 ligase complex [nucleoplasm] (Danio rerio)
zgc:63840 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:Q6PGT6
Gene Names
zgc:63840
Reference Genes
BioGPS Gene:393599 zgc:63840
ENSEMBL:ENSDARG00000074431
KEGG Gene (Danio rerio):393599 zgc:63840
Monarch:393599 zgc:63840
NCBI Gene:393599 zgc:63840
Reference Transcript
RefSeq:NM_200626.1 zgc:63840
Participates
as a component of
RBX1:CUL4:DDB1:DCAFs [nucleoplasm] (Danio rerio)
NEDD8-CRL4 E3 ligase complex [nucleoplasm] (Danio rerio)
RBX1:CUL4:DDB1:DTL [nucleoplasm] (Danio rerio)
DDB1:DDB2 [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ERCC8:DDB1:CUL4:RBX1 [nucleoplasm] (Danio rerio)
Inferred From
DDB1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_956920.1
ZFIN
ZDB-GENE-040426-1272
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