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ddb2 [nucleoplasm]
Stable Identifier
R-DRE-5696654
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
PAR-DDB2, Q2YDS1
Locations in the PathwayBrowser
Expand all
DNA Repair (Danio rerio)
Nucleotide Excision Repair (Danio rerio)
Global Genome Nucleotide Excision Repair (GG-NER) (Danio rerio)
DNA Damage Recognition in GG-NER (Danio rerio)
PARP1 or PARP2 PARylates DDB2 and autoPARylates (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
Dual Incision in GG-NER (Danio rerio)
5'- incision of DNA by ERCC1:ERCC4 in GG-NER (Danio rerio)
GG-NER incision complex:5'-incised damaged DNA [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
GG-NER incision complex:Open bubble dsDNA [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
Formation of Incision Complex in GG-NER (Danio rerio)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in GG-NER (Danio rerio)
GG-NER incision complex:Open bubble dsDNA [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
GG-NER pre-incision complex:Open bubble-dsDNA [nucleoplasm] (Danio rerio)
Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1, PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
CHD1L is recruited to GG-NER site (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
ERCC2 and ERCC3 DNA helicases form an open bubble structure in damaged DNA (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Open bubble-dsDNA:PAR-UV-DDB:TFIIH Core:XPA:PAR-PARP1,PAR-PARP2:CHD1L [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Open bubble-dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
TFIIH binds GG-NER site to form a verification complex (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:TFIIH:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB:PAR-PARP1,PAR-PARP2 [nucleoplasm] (Danio rerio)
Ub:XPC:RAD23:CETN2:Distorted dsDNA:PAR-UV-DDB [nucleoplasm] (Danio rerio)
PAR-UV-DDB [nucleoplasm] (Danio rerio)
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
ddb2 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:Q2YDS1
Gene Names
ddb2
Reference Genes
ENSEMBL:ENSDARG00000041140
Other Identifiers
100004133
13057951
A_15_P207021
A_15_P767456
CUST_4790_PI428451953
CUST_4791_PI428451953
CUST_9727_PI428451958
DRER08137
DRER15451
DRER46034
Dr.25576.1.A1_at
ENSDART00000060302
ENSDART00000060302_1
GO:0003677
GO:0003684
GO:0005515
GO:0005634
GO:0006281
GO:0043226
GO:0080008
GT_Xhyb_NM_001083061.1_334865
GT_Xhyb_XM_005159034.1_334875
GT_Xhyb_XM_005159035.1_322945
MADDr01006066
OTTDART00000016309
Participates
as a component of
DDB1:PAR-DDB2 [nucleoplasm] (Danio rerio)
Other forms of this molecule
ddb2 [nucleoplasm]
Inferred From
PAR-DDB2 [nucleoplasm]
(Homo sapiens)
Modified Residues
Name
L-glutamyl-5-poly(ADP-ribose) at unknown position
PsiMod Name
L-glutamyl-5-poly(ADP-ribose)
PsiMod Definition
A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl-5-poly(ADP-ribose).
Cross References
ZFIN
ZDB-GENE-050419-169
Ensembl
ENSDARG00000041140
,
ENSDART00000180316
,
ENSDARG00000114723
,
ENSDARP00000060301
,
ENSDART00000060302
,
ENSDARP00000152759
PRO
Q2YDS1
HMDB Protein
HMDBP12802
PDB
3EI3
,
4A09
,
3EI1
,
3EI2
,
4A0B
,
4A08
,
4A0A
,
4A0L
,
4A0K
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