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ybx1 [nucleoplasm]
Stable Identifier
R-DRE-72041
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
YBX1, B5DE31
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Danio rerio)
Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
mRNA Splicing (Danio rerio)
mRNA Splicing - Major Pathway (Danio rerio)
Formation of Exon Junction Complex (Danio rerio)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Formation of the Spliceosomal B Complex (Danio rerio)
Spliceosomal A Complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Spliceosomal B Complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Formation of the active Spliceosomal C (B*) complex (Danio rerio)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Lariat Formation and 5'-Splice Site Cleavage (Danio rerio)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
mRNA Splicing - Minor Pathway (Danio rerio)
ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Danio rerio)
ATAC C Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Danio rerio)
ATAC C Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Formation of AT-AC A complex (Danio rerio)
ATAC A Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Formation of AT-AC B Complex (Danio rerio)
ATAC A Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
ATAC B Complex [nucleoplasm] (Danio rerio)
ATAC A Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
Formation of AT-AC C complex (Danio rerio)
ATAC B Complex [nucleoplasm] (Danio rerio)
ATAC A Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
ATAC C Complex [nucleoplasm] (Danio rerio)
U11 snRNP [nucleoplasm] (Danio rerio)
ybx1 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:B5DE31
Gene Names
ybx1
Reference Genes
BioGPS Gene:795398 ybx1
ENSEMBL:ENSDARG00000004757
KEGG Gene (Danio rerio):795398 ybx1
Monarch:795398 ybx1
NCBI Gene:795398 ybx1
Reference Transcript
RefSeq:NM_001126457.1 ybx1
RefSeq:NM_131620.1 ybx1
Other Identifiers
13255899
795398
A_15_P105807
A_15_P108073
A_15_P114925
A_15_P119989
A_15_P210766
A_15_P211901
A_15_P215596
A_15_P322601
A_15_P502382
A_15_P624631
A_15_P726921
A_15_P727961
A_15_P728256
BC050156
BC070000
CUST_26561_PI428451953
CUST_3242_PI428451958
CUST_4121_PI423952288
CUST_4122_PI423952288
CUST_4123_PI423952288
CUST_4124_PI423952288
CUST_4125_PI423952288
CUST_4126_PI423952288
CUST_4127_PI423952288
CUST_4128_PI423952288
DRER03139
DRER18591
DRER27460
DRER28628
Dr.1161.1.S1_at
ENSDART00000024320
ENSDART00000024320_1
ENSDART00000024320_2
ENSDART00000110512
GO:0000003
GO:0000932
GO:0001556
GO:0003674
GO:0003676
GO:0003677
GO:0003723
GO:0005515
GO:0005575
GO:0005576
GO:0005615
GO:0005622
GO:0005634
GO:0005737
GO:0006397
GO:0006412
GO:0006810
GO:0006950
GO:0007343
GO:0007568
GO:0008150
GO:0008190
GO:0008380
GO:0008544
GO:0009056
GO:0009058
GO:0009790
GO:0010468
GO:0017148
GO:0021700
GO:0030154
GO:0034641
GO:0034655
GO:0035198
GO:0043226
GO:0045947
GO:0048025
GO:0048255
GO:0048598
GO:0048856
GO:0050658
GO:0050686
GO:0051031
GO:0051236
GO:0062153
GO:0070062
GO:1900364
GO:1990428
GO:2000773
GT_Xhyb_NM_001126457.1_346225
GT_Xhyb_XM_005167284.1_392315
GT_Xhyb_XM_005167285.1_392325
LOLS00522
MADDr01006679
NM_131620
OTTDART00000025612
Participant Of
hasComponent
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliceosomal A Complex [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal E Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
U11 snRNP [nucleoplasm]
Inferred From
YBX1 [nucleoplasm] (Homo sapiens)
Cross References
RefSeq
NP_571695.1
,
NP_001119929.1
Ensembl
ENSDARG00000004757
,
ENSDARP00000101517
,
ENSDARP00000135135
,
ENSDART00000163922
,
ENSDART00000110512
PDB
6A6J
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