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si:dkey-1f1.2 [cytosol]
Stable Identifier
R-DRE-72470
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
cytosol
Synonyms
RPL38, Q6DGL9
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Danio rerio)
Nonsense-Mediated Decay (NMD) (Danio rerio)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (Danio rerio)
SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) (Danio rerio)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
SMG6 hydrolyzes mRNA with premature termination codon (Danio rerio)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
p-4S-UPF1 recruits SMG5, SMG7, SMG6, PNRC2, DCP1A, and PP2A (Danio rerio)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (Danio rerio)
Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
UPF1:eRF3 Complex on Translated mRNA [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
Metabolism of proteins (Danio rerio)
Translation (Danio rerio)
Eukaryotic Translation Initiation (Danio rerio)
Cap-dependent Translation Initiation (Danio rerio)
Formation of a pool of free 40S subunits (Danio rerio)
Release of 40S and 60S subunits from the 80S ribosome (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
L13a-mediated translational silencing of Ceruloplasmin expression (Danio rerio)
Dissociation of L13a from the 60s ribosomal subunit (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
60s ribosomal complex lacking L13a subunit [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
SRP-dependent cotranslational protein targeting to membrane (Danio rerio)
Nascent polypeptide:mRNA:ribosome complex binds signal recognition particle (SRP) (Danio rerio)
SRP:polypeptide+signal:ribosome [cytosol] (Danio rerio)
ribosome:mRNA:polypeptide+signal [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
ribosome:mRNA:polypeptide+signal [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
si:dkey-1f1.2 [cytosol] (Danio rerio)
External Reference Information
External Reference
UniProt:Q6DGL9
Gene Names
si:dkey-1f1.2
Reference Genes
BioGPS Gene:436759 si:dkey-1f1.2
ENSEMBL:ENSDARG00000006413
ENSEMBL:ENSDARG00000006413.8 si:dkey-1f1.2
KEGG Gene (Danio rerio):436759 si:dkey-1f1.2
Monarch:436759 si:dkey-1f1.2
NCBI Gene:436759 si:dkey-1f1.2
Reference Transcript
RefSeq:NM_001002486.2 si:dkey-1f1.2
Other Identifiers
12987497
436759
A_15_P116145
A_15_P167071
A_15_P626801
CUST_14552_PI428451953
CUST_9_PI428451958
DRER02679
DRER43787
Dr.24921.2.S1_at
ENSDART00000021069
ENSDART00000021069_1
ENSDART00000021069_2
GO:0003735
GO:0005198
GO:0005829
GO:0005840
GO:0006412
GO:0022618
GO:0022625
GO:0043009
GO:0043226
GO:0048856
GO:0065003
GO:1990904
GT_Spec_NM_001002486.2_426615
GT_Spec_NM_001002486.2_426616
GT_Spec_NM_001002486.2_426617
LOLS02412
MADDr01000368
MADDr01012861
NM_001002486
OTTDART00000027980
OTTDART00000027981
Participates
as a component of
60s ribosomal complex lacking L13a subunit [cytosol] (Danio rerio)
60S ribosomal complex [cytosol] (Danio rerio)
Inferred From
RPL38 [cytosol]
(Homo sapiens)
Cross References
RefSeq
NP_001002486.1
ZFIN
ZDB-GENE-030131-8752
Ensembl
ENSDARP00000112691
,
ENSDART00000021069
,
ENSDART00000145377
,
ENSDARG00000006413
,
ENSDARP00000005837
PDB
7OYA
,
7OYB
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