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SMARCB1 [nucleoplasm]
Stable Identifier
R-HSA-389261
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Snf5, INI1
Locations in the PathwayBrowser
Expand all
Chromatin organization (Homo sapiens)
Chromatin modifying enzymes (Homo sapiens)
RMTs methylate histone arginines (Homo sapiens)
CCND1:CDK4:PRMT5:pT5-WDR77 methylates arginine-9 of histone H3 (H3R8) (Homo sapiens)
SWI/SNF chromatin remodelling complex:PRMT5:pT5-WDR77 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
COPRS:CCND1:CDK4:PRMT5:pT5-WDR77 methylates arginine-4 of histone H4 (H4R3) (Homo sapiens)
SWI/SNF chromatin remodelling complex:PRMT5:pT5-WDR77 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex enhances MEP50:PRMT5 methyltransferase activity (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex:PRMT5:pT5-WDR77 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
Generic Transcription Pathway (Homo sapiens)
Transcriptional regulation by RUNX1 (Homo sapiens)
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known (Homo sapiens)
RUNX1 binds the SWI/SNF complex (Homo sapiens)
RUNX1:CBFB:SWI/SNF [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
SWI/SNF chromatin remodelling complex [nucleoplasm] (Homo sapiens)
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm] (Homo sapiens)
SMARCB1 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q12824 SMARCB1
Gene Names
SMARCB1, BAF47, INI1, SNF5L1
Chain
chain:1-385
Reference Genes
BioGPS Gene:6598 SMARCB1
COSMIC (genes):SMARCB1 SMARCB1
CTD Gene:6598 SMARCB1
dbSNP Gene:6598 SMARCB1
ENSEMBL:ENSG00000099956 SMARCB1
ENSEMBL:ENSG00000275837 SMARCB1
HGNC:11103 SMARCB1
KEGG Gene (Homo sapiens):6598 SMARCB1
Monarch:6598 SMARCB1
NCBI Gene:6598 SMARCB1
OMIM:601607 SMARCB1
UCSC:Q12824 SMARCB1
Reference Transcript
RefSeq:NM_003073.4 SMARCB1
RefSeq:NM_001007468.2 SMARCB1
Other Identifiers
0004210603
11745213_a_at
11753187_a_at
11755155_x_at
16928046
212167_s_at
228898_s_at
229719_s_at
3939377
3939378
3939379
3939380
3939382
3939383
3939384
3939388
3939389
3939397
3939399
3939403
3939405
3939406
3939407
3939408
3939409
3939410
3939411
3939412
3939413
3939414
3939415
40416_at
6598
8071768
90507_at
A_14_P111527
A_23_P68824
A_33_P3232508
A_33_P3343073
GE62285
GO:0000228
GO:0000790
GO:0000978
GO:0001164
GO:0001188
GO:0001650
GO:0002039
GO:0003674
GO:0003677
GO:0003713
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005694
GO:0005730
GO:0006259
GO:0006281
GO:0006325
GO:0006337
GO:0006338
GO:0006357
GO:0006464
GO:0006950
GO:0007049
GO:0007165
GO:0007399
GO:0008134
GO:0008150
GO:0009058
GO:0015074
GO:0016032
GO:0016514
GO:0022607
GO:0030957
GO:0031492
GO:0032991
GO:0034641
GO:0035060
GO:0039692
GO:0042592
GO:0043044
GO:0043226
GO:0043231
GO:0043923
GO:0044403
GO:0045944
GO:0048856
GO:0051091
GO:0051276
GO:0065003
GO:0071564
GO:0071565
GO:0090240
GO:1900110
GO:1900113
GO:1901838
GO:1902661
GO:2000617
Hs.14587.1.A1_3p_a_at
Hs.14587.2.S1_3p_a_at
Hs.159971.2.A1_3p_a_at
ILMN_1758823
ILMN_2403458
PH_hs_0026820
TC22000139.hg
Participant Of
hasComponent
SMARCA2,SMARCA4:SMARCB1:SMARCC1:SMARCC2 [nucleoplasm]
Inferred To
sfh1 [nucleoplasm] (Schizosaccharomyces pombe)
snfc-5 [nucleoplasm] (Caenorhabditis elegans)
SFH1 [nucleoplasm] (Saccharomyces cerevisiae)
Smarcb1 [nucleoplasm] (Mus musculus)
Smarcb1 [nucleoplasm] (Rattus norvegicus)
smarcb1b [nucleoplasm] (Danio rerio)
smarcb1 [nucleoplasm] (Xenopus tropicalis)
SMARCB1 [nucleoplasm] (Canis familiaris)
SMARCB1 [nucleoplasm] (Dictyostelium discoideum)
SMARCB1 [nucleoplasm] (Gallus gallus)
SMARCB1 [nucleoplasm] (Sus scrofa)
Snr1 [nucleoplasm] (Drosophila melanogaster)
Cross References
RefSeq
NP_001007469.1
,
NP_003064.2
OpenTargets
ENSG00000099956
HPA
ENSG00000099956-SMARCB1
GeneCards
Q12824
Ensembl
ENSP00000479330
,
ENSP00000383984
,
ENSP00000494049
,
ENSG00000275837
,
ENSP00000486870
,
ENST00000631333
,
ENSG00000099956
,
ENST00000407422
,
ENST00000644036
,
ENST00000618915
PRO
Q12824
Orphanet
15526
PDB
5L7A
,
5L7B
,
6AX5
,
5GJK
,
5AJ1
,
6LTJ
,
6LTH
,
6KZ7
,
6UCH
Interactors (25)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P51532 SMARCA4
1
SMARCA4 [nucleoplasm]
(R-HSA-201686)
0.942
34
UniProt:Q9NPI1 BRD7
1
BRD7 [nucleoplasm]
(R-HSA-3222092)
0.69
8
UniProt:P27797 CALR
6
CALR [integral component of lumenal side of endoplasmic reticulum membrane]
(R-HSA-985502)
CALR [endoplasmic reticulum lumen]
(R-HSA-195905)
CALR [endoplasmic reticulum-Golgi intermediate compartment membrane]
(R-HSA-8863866)
CALR [phagocytic vesicle membrane]
(R-HSA-1236879)
CALR [extracellular region]
(R-HSA-2197641)
CALR [endocytic vesicle lumen]
(R-HSA-2239448)
0.613
5
UniProt:P42858 HTT
1
HTT [nucleoplasm]
(R-HSA-9023590)
0.556
9
UniProt:P14136 GFAP
3
GFAP [lysosomal membrane]
(R-HSA-9625195)
p-GFAP [lysosomal membrane]
(R-HSA-9626054)
GFAP [cytosol]
(R-HSA-1253311)
0.556
3
UniProt:P08670 VIM
11
VIM(86-466) [cytosol]
(R-HSA-350294)
VIM(2-85) [cytosol]
(R-HSA-350264)
VIM(430-466) [cytosol]
(R-HSA-350316)
VIM(2-429) [cytosol]
(R-HSA-350317)
VIM(260-466) [cytosol]
(R-HSA-350314)
VIM(2-259) [cytosol]
(R-HSA-350323)
VIM [cytosol]
(R-HSA-201600)
Vimentin [late endosome lumen]
(R-HSA-9660019)
Vimentin [microtubule organizing center]
(R-HSA-9657898)
Vimentin [cytosol]
(R-HSA-9646687)
Vimentin [lysosomal lumen]
(R-HSA-9659977)
0.556
3
UniProt:Q53GS7 GLE1
1
GLE1 [nucleoplasm]
(R-HSA-8932905)
0.556
3
UniProt:P06396 GSN
7
GSN [ficolin-1-rich granule lumen]
(R-HSA-6801465)
GSN(200-270) [extracellular region]
(R-HSA-976940)
GSN [extracellular region]
(R-HSA-6806510)
GSN [secretory granule lumen]
(R-HSA-6801486)
GSN(404-782) [cytosol]
(R-HSA-350272)
GSN(28-403) [cytosol]
(R-HSA-201618)
GSN [cytosol]
(R-HSA-350275)
0.556
3
UniProt:P19404 NDUFV2
1
NDUFV2 [mitochondrial inner membrane]
(R-HSA-163939)
0.556
3
UniProt:P16284 PECAM1
4
p-Y663,Y686-PECAM1(27-?) [plasma membrane]
(R-HSA-210007)
PECAM1 [plasma membrane]
(R-HSA-114686)
PECAM1 [secretory granule membrane]
(R-HSA-6804778)
PECAM1 [platelet alpha granule membrane]
(R-HSA-61489)
0.556
3
UniProt:O75376 NCOR1
2
NCOR1 [cytosol]
(R-HSA-1253310)
NCOR1 [nucleoplasm]
(R-HSA-442501)
0.524
3
UniProt:Q8K1P7 Smarca4
2
Smarca4 [nucleoplasm]
(R-RNO-201686)
Smarca4 [nucleoplasm]
(R-RNO-9614783)
0.499
2
UniProt:Q00059 TFAM
2
TFAM(1-246) [cytosol]
(R-HSA-1592203)
TFAM [mitochondrial matrix]
(R-HSA-163312)
0.462
3
UniProt:P51991 HNRNPA3
1
HNRNPA3 [nucleoplasm]
(R-HSA-71931)
0.462
4
UniProt:P07237 P4HB
3
HC53,56-P4HB [endoplasmic reticulum lumen]
(R-HSA-3341287)
P4HB [endoplasmic reticulum lumen]
(R-HSA-174692)
p-P4HB [endoplasmic reticulum lumen]
(R-HSA-8956902)
0.462
4
UniProt:P22061 PCMT1
1
PCMT1 [cytosol]
(R-HSA-5676580)
0.462
4
UniProt:P14625 HSP90B1
4
HSP90B1 [extracellular region]
(R-HSA-3221653)
HSP90B1 [endocytic vesicle lumen]
(R-HSA-3221623)
p-HSP90B1 [endoplasmic reticulum lumen]
(R-HSA-8957016)
HSP90B1 [endoplasmic reticulum lumen]
(R-HSA-981545)
0.462
4
UniProt:P55735 SEC13
4
SEC13 [ER to Golgi transport vesicle membrane]
(R-HSA-204012)
SEC13 [cytosol]
(R-HSA-203981)
SEC13 [endoplasmic reticulum membrane]
(R-HSA-203994)
SEC13 [lysosomal membrane]
(R-HSA-9638246)
0.462
4
UniProt:O43819 SCO2
1
SCO2 [mitochondrial matrix]
(R-HSA-5336150)
0.462
3
UniProt:Q9Y4L1 HYOU1
3
HYOU1 [extracellular region]
(R-HSA-3221939)
HYOU1 [endocytic vesicle lumen]
(R-HSA-3221924)
HYOU1 [endoplasmic reticulum lumen]
(R-HSA-535542)
0.462
4
UniProt:P30101 PDIA3
3
PDIA3 [recycling endosome membrane]
(R-HSA-8863849)
PDIA3 [phagocytic vesicle]
(R-HSA-1236870)
PDIA3 [endoplasmic reticulum lumen]
(R-HSA-901028)
0.462
4
UniProt:Q07666 KHDRBS1
3
p-Y435,Y440,Y443-KHDRBS1 [cytosol]
(R-HSA-8848995)
p-Y435,Y440,Y443-KHDRBS1 [nucleoplasm]
(R-HSA-8848970)
KHDRBS1 [nucleoplasm]
(R-HSA-8848941)
0.462
4
UniProt:P05412 JUN
4
p-S63,S73-JUN [nucleoplasm]
(R-HSA-450237)
JUN [nucleoplasm]
(R-HSA-450250)
JUN [cytosol]
(R-HSA-168194)
p-S63,S73-JUN [cytosol]
(R-HSA-8868682)
0.462
2
UniProt:O43852 CALU
3
p-CALU [endoplasmic reticulum lumen]
(R-HSA-8956931)
CALU [endoplasmic reticulum lumen]
(R-HSA-350695)
CALU [extracellular region]
(R-HSA-350739)
0.462
4
UniProt:Q96PK6 RBM14
1
RBM14 [nucleoplasm]
(R-HSA-8938345)
0.462
3
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