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LSM6 [nucleoplasm]
Stable Identifier
R-HSA-6806794
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
U6 snRNA-associated Sm-like protein LSm6, LSM6_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM6 [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM6 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:P62312 LSM6
Gene Names
LSM6
Chain
chain:1-80
Reference Genes
BioGPS Gene:11157 LSM6
COSMIC (genes):LSM6 LSM6
CTD Gene:11157 LSM6
dbSNP Gene:11157 LSM6
ENSEMBL:ENSG00000164167 LSM6
ENSEMBL_homo_sapiens_GENE:ENSG00000164167.12 LSM6
HGNC:17017 LSM6
KEGG Gene (Homo sapiens):11157 LSM6
Monarch:11157 LSM6
NCBI Gene:11157 LSM6
OMIM:607286 LSM6
UCSC:P62312 LSM6
Reference Transcript
RefSeq:NM_007080.2 LSM6
RefSeq:XM_017007673.1 LSM6
RefSeq:XM_017007672.1 LSM6
Other Identifiers
11157
11721137_a_at
11721138_x_at
16971226
205036_PM_at
205036_at
2746292
2746293
2746294
2746295
2746296
2746297
2746298
2746299
2746303
2746307
2746310
2746311
2746312
2746313
2746314
2746315
2746316
2746317
2746318
2746319
2746320
2746321
2746322
35991_at
3810955
8097679
A_14_P109721
A_23_P259451
GE55262
GO:0000398
GO:0000932
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005688
GO:0005730
GO:0005732
GO:0005737
GO:0005829
GO:0006364
GO:0006397
GO:0006399
GO:0006402
GO:0008033
GO:0008380
GO:0016071
GO:0030490
GO:0030532
GO:0042254
GO:0043226
GO:0043229
GO:0046540
GO:0046982
GO:0071005
GO:0120114
GO:0120115
GO:1990904
HMNXSV003040144
ILMN_1675462
PH_hs_0022666
PH_hs_0038133
TC04000717.hg
TC04002247.hg
g5901997_3p_at
Participates
as a component of
LSM2-8 complex [nucleoplasm] (Homo sapiens)
Other forms of this molecule
LSM6 [cytosol]
Inferred To
lsm6 [nucleoplasm]
(Dictyostelium discoideum)
lsm6 [nucleoplasm]
(Schizosaccharomyces pombe)
lsm6 [nucleoplasm]
(Xenopus tropicalis)
LSM6 [nucleoplasm]
(Bos taurus)
LSM6 [nucleoplasm]
(Canis familiaris)
LSM6 [nucleoplasm]
(Gallus gallus)
LSM6 [nucleoplasm]
(Plasmodium falciparum)
LSM6 [nucleoplasm]
(Sus scrofa)
Dmel\CG9344 [nucleoplasm]
(Drosophila melanogaster)
Lsm6 [nucleoplasm]
(Mus musculus)
Lsm6 [nucleoplasm]
(Rattus norvegicus)
lsm-6 [nucleoplasm]
(Caenorhabditis elegans)
Cross References
RefSeq
NP_009011.1
,
XP_016863162.1
,
XP_016863161.1
OpenTargets
ENSG00000164167
GeneCards
P62312
HPA
ENSG00000164167-LSM6
Ensembl
ENST00000649747
,
ENSG00000164167
,
ENSP00000296581
,
ENSP00000422392
,
ENSP00000420929
,
ENST00000502781
,
ENST00000515311
,
ENSP00000497311
,
ENSP00000427036
,
ENST00000504181
,
ENST00000296581
PRO
P62312
Pharos - Targets
P62312
PDB
6QX9
,
7ABG
,
6AH0
,
3JCR
,
6QW6
,
5O9Z
,
6AHD
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:O00560 SDCBP
3
SDCBP [extracellular region]
(R-HSA-6806206)
SDCBP [azurophil granule lumen]
(R-HSA-6799372)
SDCBP [cytosol]
(R-HSA-373639)
0.718
6
UniProt:P62316 SNRPD2
2
SNRPD2 [nucleoplasm]
(R-HSA-71901)
SNRPD2 [cytosol]
(R-HSA-191810)
0.667
3
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