Toggle navigation
About
What is Reactome ?
News
Team
Scientific Advisory Board
Editorial Calendar
Statistics
Our Logo
License Agreement
Disclaimer
Content
Table of Contents
DOIs
Data Schema
ORCID Integration Project
Docs
Userguide
Pathway Browser
How do I search ?
Details Panel
Analysis Tools
Diseases
ReactomeFIViz
Developer's Zone
Graph Database
Analysis Service
Content Service
Pathways Overview
Pathway Diagrams
Icon Info
EHLD Specs & Guidelines
Icon Library Guidelines
Data Model
Computationally inferred events
Linking to Us
Citing us
Tools
Pathway Browser
Analyze Data
Species Comparison
Analysis Service
Content Service
ReactomeFIViz
Advanced Data Search
Site map
Community
Icon Library
Outreach
Events
Training
Publications
Partners
Papers Citing Us
Resources Guide
Collaboration
Download
About
What is Reactome ?
News
Team
Scientific Advisory Board
Editorial Calendar
Statistics
Our Logo
License Agreement
Disclaimer
Content
Table of Contents
DOIs
Data Schema
ORCID Integration Project
Docs
Userguide
Pathway Browser
How do I search ?
Details Panel
Analysis Tools
Diseases
ReactomeFIViz
Developer's Zone
Graph Database
Analysis Service
Content Service
Pathways Overview
Pathway Diagrams
Icon Info
EHLD Specs & Guidelines
Icon Library Guidelines
Data Model
Computationally inferred events
Linking to Us
Citing us
Tools
Pathway Browser
Analyze Data
Species Comparison
Analysis Service
Content Service
ReactomeFIViz
Advanced Data Search
Site map
Community
Icon Library
Outreach
Events
Training
Publications
Partners
Papers Citing Us
Resources Guide
Collaboration
Download
Search ...
Go!
EFTUD2 [nucleoplasm]
Stable Identifier
R-HSA-71883
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
U5-116 kDa protein, U5S1_HUMAN, 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP- specific protein, 116 kDa) (U5-116 kDa), 116 kDa U5 small nuclear ribonucleoprotein component, U5 snRNP- specific protein, 116 kDa, U5-116 kDa
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Cleavage at the 3'-Splice Site and Exon Ligation (Homo sapiens)
intron-containing complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of Exon Junction Complex (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of an intermediate Spliceosomal C (Bact) complex (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B Complex (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of the active Spliceosomal C (B*) complex (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Lariat Formation and 5'-Splice Site Cleavage (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
mRNA Splicing - Minor Pathway (Homo sapiens)
ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of AT-AC B Complex (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
U4 ATAC:U5:U6 ATAC Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
U4 ATAC:U5:U6 ATAC Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
Formation of AT-AC C complex (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
U4 ATAC:U5:U6 ATAC Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
U5 snRNP [nucleoplasm] (Homo sapiens)
EFTUD2 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q15029 EFTUD2
Gene Names
EFTUD2, KIAA0031, SNRP116
Chain
chain:1-972
Reference Genes
BioGPS Gene:9343 EFTUD2
COSMIC (genes):EFTUD2 EFTUD2
CTD Gene:9343 EFTUD2
dbSNP Gene:9343 EFTUD2
ENSEMBL:ENSG00000108883 EFTUD2
HGNC:30858 EFTUD2
KEGG Gene (Homo sapiens):9343 EFTUD2
Monarch:9343 EFTUD2
NCBI Gene:9343 EFTUD2
OMIM:603892 EFTUD2
UCSC:Q15029 EFTUD2
Reference Transcript
RefSeq:NM_001258354.1 EFTUD2
RefSeq:NM_001142605.1 EFTUD2
RefSeq:NM_001258353.1 EFTUD2
RefSeq:NM_004247.3 EFTUD2
Other Identifiers
0000130278
11716057_a_at
11716058_a_at
11716059_x_at
11740353_a_at
11740354_a_at
11758740_at
16845742
22021
222397_at
222398_s_at
3759358
3759359
3759360
3759361
3759362
3759364
3759366
3759368
3759369
3759370
3759371
3759372
3759374
3759377
3759378
3759380
3759382
3759384
3759385
3759389
3759393
3759394
3759396
3759397
3759399
3759400
3759401
3759402
3759403
3759404
3759405
3759406
3759408
3759409
3JCR
5MQF
5O9Z
5XJC
5YZG
5Z56
5Z57
5Z58
6AH0
6AHD
6FF4
6FF7
6ICZ
6ID0
6ID1
6QDV
6QW6
6QX9
8016099
9343
A_23_P55190
AAH02360
AC015936
AK296367
AK297392
AK316098
BAA04699
BAG59042
BAG59832
BAH14469
BC002360
CCDS11489
CCDS45707
CCDS59295
CH471178
D21163
D21163_at
EAW51573
EAW51574
EFTUD2
EFTUD2-201
EFTUD2-202
EFTUD2-220
EFTUD2-223
ENSG00000108883
ENSP00000385873
ENSP00000392094
ENSP00000465058
ENSP00000467805
ENST00000402521
ENST00000402521.7
ENST00000426333
ENST00000426333.6
ENST00000591382
ENST00000591382.5
ENST00000592576
ENST00000592576.5
EntrezGene:9343
EntrezGene:EFTUD2
g12803112_3p_a_at
GE57110
GO:0000166
GO:0000398
GO:0003674
GO:0003723
GO:0003924
GO:0005515
GO:0005525
GO:0005575
GO:0005622
GO:0005623
GO:0005634
GO:0005654
GO:0005681
GO:0005737
GO:0005829
GO:0006397
GO:0008150
GO:0008380
GO:0015030
GO:0016020
GO:0016607
GO:0030623
GO:0032991
GO:0034641
GO:0035690
GO:0042220
GO:0043167
GO:0043226
GO:0046540
GO:0071005
GO:0071007
GO:0071013
GO:1990904
HGNC:30858
HPA022021
Hs.151787.0.S3_3p_at
ILMN_1738819
IPR000640
IPR000795
IPR004161
IPR005225
IPR005517
IPR009000
IPR014721
IPR020568
IPR027417
IPR031950
IPR035647
IPR035655
IPR041095
K7EIT3
K7EIV5
K7EP67
K7EQ26
K7ERJ5
MIM:603892
MIM:610536
NM_001142605
NM_001258353
NM_001258354
NM_004247
NP_001136077
NP_001245282
NP_001245283
NP_004238
PF00009
PF00679
PF03144
PF03764
PF14492
PF16004
PH_hs_0031865
PH_hs_0038658
PR00315
SM00838
SM00889
TC17001586.hg
UPI0000137931
UPI0000E2468F
UPI0000E24692
XR_934602
Participant Of
hasComponent
U5 snRNP [nucleoplasm]
Inferred To
Ghost homologue of EFTUD2 [nucleoplasm] (Bos taurus)
EFTUD2 [nucleoplasm] (Caenorhabditis elegans)
EFTUD2 [nucleoplasm] (Canis familiaris)
EFTUD2 [nucleoplasm] (Danio rerio)
EFTUD2 [nucleoplasm] (Dictyostelium discoideum)
EFTUD2 [nucleoplasm] (Drosophila melanogaster)
EFTUD2 [nucleoplasm] (Gallus gallus)
EFTUD2 [nucleoplasm] (Mus musculus)
EFTUD2 [nucleoplasm] (Plasmodium falciparum)
EFTUD2 [nucleoplasm] (Rattus norvegicus)
EFTUD2 [nucleoplasm] (Schizosaccharomyces pombe)
EFTUD2 [nucleoplasm] (Sus scrofa)
EFTUD2 [nucleoplasm] (Xenopus tropicalis)
Cross References
RefSeq
NP_001136077.1
,
NP_001245283.1
,
NP_001245282.1
,
NP_004238.3
OpenTargets
ENSG00000108883
GeneCards
Q15029
PRO
Q15029
Orphanet
20817
HMDB Protein
HMDBP08614
PDB
6ID0
,
5Z57
,
6ID1
,
6FF4
,
5YZG
,
5XJC
,
5O9Z
,
6QDV
,
3JCR
,
5Z56
,
6AH0
,
6AHD
,
6FF7
,
6QW6
,
5MQF
,
6QX9
,
5Z58
,
6ICZ
Interactors (5)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P01106 MYC
2
PolyUb-MYC [nucleoplasm]
(R-HSA-6783169)
MYC [nucleoplasm]
(R-HSA-188379)
0.677
6
UniProt:O95400 CD2BP2
1
CD2BP2 [nucleoplasm]
(R-HSA-72054)
0.564
2
UniProt:Q13573 SNW1
1
SNW1 [nucleoplasm]
(R-HSA-351663)
0.527
2
UniProt:P04792 HSPB1
3
p-S15,S78,S82-HSP27 [cytosol]
(R-HSA-5218697)
HSPB1 [cytosol]
(R-HSA-450563)
p-S78,S82 HSPB1 [cytosol]
(R-HSA-5687009)
0.508
2
UniProt:Q00613 HSF1
11
p-S303-HSF1 [cytosol]
(R-HSA-4793927)
p-S121-HSF1 [cytosol]
(R-HSA-4793906)
p-S307-HSF1 [cytosol]
(R-HSA-4793929)
p-S303,307-HSF1 [cytosol]
(R-HSA-4793922)
HSF1 [nucleoplasm]
(R-HSA-5082385)
hC36,103-HSF1 [cytosol]
(R-HSA-4793916)
p-S230-hC36,103-HSF1 [nucleoplasm]
(R-HSA-5082361)
p-S326-hC36,103-HSF1 [nucleoplasm]
(R-HSA-5082355)
Ac-K80-hC36,103-HSF1 [nucleoplasm]
(R-HSA-5097238)
HSF1 [cytosol]
(R-HSA-3371452)
hC36,103-HSF1 [nucleoplasm]
(R-HSA-3371416)
0.508
2
© 2019
Reactome