Reactome | SNRPF [nucleoplasm]

SNRPF [nucleoplasm]

Stable Identifier

R-HSA-71907

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

nucleoplasm

Synonyms

Sm protein F, snRNP F, RUXF_HUMAN, Small nuclear ribonucleoprotein F, snRNP-F, Sm-F, SmF

Locations in the PathwayBrowser

Expand all

External Reference Information

External Reference

UniProt:P62306 SNRPF

Gene Names

SNRPF, PBSCF

Chain

initiator methionine:1, chain:2-86

Reference Genes

BioGPS Gene:6636 SNRPF

COSMIC (genes):SNRPF SNRPF

CTD Gene:6636 SNRPF

dbSNP Gene:6636 SNRPF

ENSEMBL:ENSG00000139343 SNRPF

HGNC:11162 SNRPF

KEGG Gene (Homo sapiens):6636 SNRPF

Monarch:6636 SNRPF

NCBI Gene:6636 SNRPF

OMIM:603541 SNRPF

UCSC:P62306 SNRPF

Reference Transcript

RefSeq:NM_003095.2 SNRPF

Other Identifiers

11717013_a_at

11717014_x_at

11753840_x_at

11758764_at

11763977_x_at

16755299

203832_at

3427016

3427017

3427018

3427019

3427021

3427023

3427024

3427025

3427026

3909005

3909010

41403_at

6636

7957649

A_23_P117068

A_24_P504405

GE60100

GO:0000387

GO:0000398

GO:0003674

GO:0003723

GO:0005515

GO:0005575

GO:0005622

GO:0005634

GO:0005654

GO:0005681

GO:0005683

GO:0005685

GO:0005687

GO:0005689

GO:0005732

GO:0005737

GO:0005829

GO:0006369

GO:0006397

GO:0006810

GO:0006913

GO:0008150

GO:0008334

GO:0008380

GO:0009058

GO:0022607

GO:0022618

GO:0030532

GO:0032991

GO:0034641

GO:0034709

GO:0034715

GO:0034719

GO:0043226

GO:0046540

GO:0051170

GO:0065003

GO:0071005

GO:0071007

GO:0071013

ILMN_2067370

TC12000742.hg

X85372_at

g4507130_3p_at

g4507130_3p_x_at

Participant Of

hasComponent

Other forms of this molecule

SNRPF [cytosol]

Inferred To

AMDHD1 [nucleoplasm] (Canis familiaris)

snrpf [nucleoplasm] (Danio rerio)

snrpf [nucleoplasm] (Dictyostelium discoideum)

Homologues of SNRPF [nucleoplasm] (Danio rerio)

SNRPF [nucleoplasm] (Bos taurus)

SNRPF [nucleoplasm] (Danio rerio)

SNRPF [nucleoplasm] (Gallus gallus)

SNRPF [nucleoplasm] (Sus scrofa)

SNRPF [nucleoplasm] (Xenopus tropicalis)

Snrpf [nucleoplasm] (Mus musculus)

Snrpf [nucleoplasm] (Rattus norvegicus)

snr-5 [nucleoplasm] (Caenorhabditis elegans)

SmF [nucleoplasm] (Drosophila melanogaster)

Cross References

RefSeq

NP_003086.1

Target Pathogen

5b354852be737e166372ee7b

OpenTargets

ENSG00000139343

HPA

ENSG00000139343-SNRPF

GeneCards

P62306

Ensembl

ENSP00000266735, ENSG00000139343, ENST00000266735

PRO

P62306

PDB

3JCR, 6ICZ, 5Z57, 5Z58, 6ID1, 5O9Z, 5XJT, 6Y5Q, 5XJC, 5MQF, 5XJU, 4V98, 5Z56, 4F7U, 5XJR, 6QDV, 6ID0, 5XJS, 5YZG, 3CW1, 6Y53, 5XJL, 6V4X, 6FF7, 5XJQ, 3PGW, 6QW6, 6QX9, 4PJO, 4WZJ, 6AH0

Interactors (24)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P62304 SNRPE	2	SNRPE [nucleoplasm] (R-HSA-71905) SNRPE [cytosol] (R-HSA-191782)	0.867	11
UniProt:Q9Y4Y9 LSM5	2	LSM5 [nucleoplasm] (R-HSA-6806795) LSM5 [cytosol] (R-HSA-429839)	0.841	11
UniProt:P62316 SNRPD2	2	SNRPD2 [nucleoplasm] (R-HSA-71901) SNRPD2 [cytosol] (R-HSA-191810)	0.801	11
UniProt:O14893 GEMIN2	2	GEMIN2 [cytosol] (R-HSA-191835) GEMIN2 [nucleoplasm] (R-HSA-191795)	0.786	11
UniProt:P38432 COIL			0.718	6
UniProt:Q9NSC5 HOMER3	1	HOMER3 [cytosol] (R-HSA-6794236)	0.718	9
UniProt:P54105 CLNS1A	1	CLNS1A [cytosol] (R-HSA-191796)	0.716	5
UniProt:Q9UK45 LSM7	2	LSM7 [nucleoplasm] (R-HSA-6806802) LSM7 [cytosol] (R-HSA-2028610)	0.666	6
UniProt:P14678 SNRPB	4	2xMe-SNRPB [cytosol] (R-HSA-192218) SNRPB [cytosol] (R-HSA-191798) SNRPB [nucleoplasm] (R-HSA-71896) Me2-R108,R112-SNRPB [nucleoplasm] (R-HSA-192213)	0.656	3
UniProt:Q16637 SMN1	2	SMN1 [cytosol] (R-HSA-191839) SMN1 [nucleoplasm] (R-HSA-191892)	0.643	3
UniProt:P14678-2 SNRPB			0.623	3
UniProt:Q8WXD5 GEMIN6	2	GEMIN6 [cytosol] (R-HSA-191771) GEMIN6 [nucleoplasm] (R-HSA-191799)	0.59	2
UniProt:O95400 CD2BP2	1	CD2BP2 [nucleoplasm] (R-HSA-72054)	0.564	2
UniProt:Q15428 SF3A2	1	SF3A2 [nucleoplasm] (R-HSA-71964)	0.564	2
UniProt:P62310 LSM3	2	LSM3 [nucleoplasm] (R-HSA-6806807) LSM3 [cytosol] (R-HSA-429894)	0.556	3
UniProt:Q9H1P3 OSBPL2	1	OSBPL2 [cytosol] (R-HSA-8867527)	0.556	3
UniProt:Q8TBB1 LNX1	1	LNX1 [cytosol] (R-HSA-8851641)	0.556	3
UniProt:Q6FHY5 Q6FHY5			0.556	3
UniProt:P32969 RPL9	1	RPL9 [cytosol] (R-HSA-72492)	0.556	3
UniProt:Q13422-7 IKZF1			0.556	3
UniProt:Q13422 IKZF1			0.556	3
UniProt:P42858 HTT	1	HTT [nucleoplasm] (R-HSA-9023590)	0.556	3
UniProt:P09661 SNRPA1	1	SNRPA1 [nucleoplasm] (R-HSA-71958)	0.547	2
UniProt:P08621 SNRNP70	1	SNRNP70 [nucleoplasm] (R-HSA-71913)	0.527	3

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