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DHX38 [nucleoplasm]
Stable Identifier
R-HSA-72060
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
hPrp16, Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16 (ATP- dependent RNA helicase DDX38) (DEAH-box protein 38), Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, ATP- dependent RNA helicase DHX38, DEAH-box protein 38
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Transcription Termination (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
Docking of the TAP:EJC Complex with the NPC (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
mRNA 3'-end processing (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliced mRNP [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
mRNA polyadenylation (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Cleavage at the 3'-Splice Site and Exon Ligation (Homo sapiens)
Spliced mRNP [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Formation of Exon Junction Complex (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Formation of an intermediate Spliceosomal C (Bact) complex (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal A Complex (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B Complex (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Formation of the active Spliceosomal C (B*) complex (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Lariat Formation and 5'-Splice Site Cleavage (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
DHX38 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q92620 DHX38
Gene Names
DHX38, DDX38, KIAA0224, PRP16
Chain
initiator methionine:1, chain:2-1227
Reference Genes
BioGPS Gene:9785 DHX38
COSMIC (genes):DHX38 DHX38
CTD Gene:9785 DHX38
dbSNP Gene:9785 DHX38
ENSEMBL:ENSG00000140829 DHX38
HGNC:17211 DHX38
KEGG Gene (Homo sapiens):9785 DHX38
Monarch:9785 DHX38
NCBI Gene:9785 DHX38
OMIM:605584 DHX38
UCSC:Q92620 DHX38
Reference Transcript
RefSeq:NM_014003.3 DHX38
RefSeq:XM_011523484.1 DHX38
RefSeq:XM_011523485.1 DHX38
Other Identifiers
0002370048
11744451_a_at
11744452_x_at
11745099_x_at
11747396_a_at
16820953
209178_at
3667903
3667904
3667905
3667907
3667908
3667909
3667910
3667911
3667914
3667916
3667918
3667920
3667921
3667923
3667925
3667927
3667928
3667929
3667930
3667931
3667933
3667934
3667936
3667938
3667939
3667942
3667945
3667946
3667947
3667948
3667949
37390_at
7997197
9785
A_14_P133344
A_23_P38011
D86977_at
GE81844
GO:0000166
GO:0000398
GO:0003674
GO:0003676
GO:0003723
GO:0003724
GO:0004386
GO:0005515
GO:0005524
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005681
GO:0006397
GO:0006405
GO:0006406
GO:0006810
GO:0006913
GO:0008150
GO:0008380
GO:0015031
GO:0016020
GO:0016787
GO:0016887
GO:0031124
GO:0032991
GO:0034641
GO:0043167
GO:0043226
GO:0071013
ILMN_1735679
PH_hs_0026907
TC16000601.hg
TC16001627.hg
g3123905_3p_at
Participant Of
input
Formation of the Spliceosomal A Complex
hasComponent
3' end cleaved, ligated exon containing complex [nucleoplasm]
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm]
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm]
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliced mRNA:CBC:EJC:TREX [nucleoplasm]
Spliced mRNP [nucleoplasm]
Spliceosomal A Complex [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
output
Docking of the TAP:EJC Complex with the NPC
Inferred To
l(1)G0007 [nucleoplasm] (Drosophila melanogaster)
mog-1 [nucleoplasm] (Caenorhabditis elegans)
Dhx38 [nucleoplasm] (Mus musculus)
Dhx38 [nucleoplasm] (Rattus norvegicus)
helD [nucleoplasm] (Dictyostelium discoideum)
dhx38 [nucleoplasm] (Danio rerio)
dhx38 [nucleoplasm] (Xenopus tropicalis)
DHX38 [nucleoplasm] (Canis familiaris)
DHX38 [nucleoplasm] (Gallus gallus)
DHX38 [nucleoplasm] (Sus scrofa)
Cross References
RefSeq
NP_054722.2
,
XP_011521786.1
,
XP_011521787.1
OpenTargets
ENSG00000140829
IntEnz
3.6.4.13
GeneCards
Q92620
HPA
ENSG00000140829-DHX38
Ensembl
ENST00000268482
,
ENSP00000268482
,
ENSG00000140829
PRO
Q92620
Orphanet
24463
HMDB Protein
HMDBP11901
PDB
5YZG
Interactors (6)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9NY27 PPP4R2
1
PPP4R2 [nucleoplasm]
(R-HSA-5687747)
0.597
3
UniProt:Q92917 GPKOW
1
GPKOW [nucleoplasm]
(R-HSA-8850839)
0.508
2
UniProt:P98175 RBM10
0.508
2
UniProt:O60231 DHX16
1
DHX16 [nucleoplasm]
(R-HSA-8850837)
0.508
2
UniProt:Q9NYB0 TERF2IP
1
TERF2IP [nucleoplasm]
(R-HSA-174873)
0.508
2
UniProt:Q96RS6 NUDC1
0.499
2
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