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SF3B6 [nucleoplasm]
Stable Identifier
R-HSA-83808
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
SF3B14, p14 branch site protein, Hypothetical protein CGI-110 (Protein HSPC175), Pre-mRNA branch site protein p14, CGI-110, HSPC175, Ht006
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Cleavage at the 3'-Splice Site and Exon Ligation (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of Exon Junction Complex (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of an intermediate Spliceosomal C (Bact) complex (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal A Complex (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B Complex (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of the active Spliceosomal C (B*) complex (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Lariat Formation and 5'-Splice Site Cleavage (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
mRNA Splicing - Minor Pathway (Homo sapiens)
ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC A complex (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC B Complex (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC C complex (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
U12 snRNP [nucleoplasm] (Homo sapiens)
SF3B [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
SF3B6 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q9Y3B4 SF3B6
Gene Names
SF3B6, SAP14, SF3B14, SF3B14A, CGI-110, HSPC175, HT006
Chain
chain:1-125
Reference Genes
BioGPS Gene:51639 SF3B6
COSMIC (genes):SF3B6 SF3B6
CTD Gene:51639 SF3B6
dbSNP Gene:51639 SF3B6
ENSEMBL:ENSG00000115128 SF3B6
HGNC:30096 SF3B6
KEGG Gene (Homo sapiens):51639 SF3B6
Monarch:51639 SF3B6
NCBI Gene:51639 SF3B6
OMIM:607835 SF3B6
UCSC:Q9Y3B4 SF3B6
Reference Transcript
RefSeq:NM_016047.3 SF3B6
Other Identifiers
0005700605
11717671_a_at
16895172
223416_at
2544180
2544181
2544183
2544185
2544186
2544192
2544193
51639
60461_at
8050695
A_23_P165402
GE62051
GO:0000398
GO:0001825
GO:0003674
GO:0003676
GO:0003723
GO:0003729
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005681
GO:0005684
GO:0005686
GO:0005689
GO:0006397
GO:0008150
GO:0008380
GO:0009790
GO:0032991
GO:0034641
GO:0043226
GO:0048646
GO:0048856
GO:0071011
GO:0071013
ILMN_1703720
ILMN_2182120
PH_hs_0010562
TC02001644.hg
g9963796_3p_at
Participant Of
hasComponent
SF3B [nucleoplasm]
U12 snRNP [nucleoplasm]
Inferred To
sf3b6 [nucleoplasm] (Danio rerio)
sf3b6 [nucleoplasm] (Xenopus tropicalis)
Ghost homologue of SF3B6 [nucleoplasm] (Gallus gallus)
SF3B6 [nucleoplasm] (Caenorhabditis elegans)
SF3B6 [nucleoplasm] (Canis familiaris)
SF3B6 [nucleoplasm] (Dictyostelium discoideum)
SF3B6 [nucleoplasm] (Sus scrofa)
Sf3b6 [nucleoplasm] (Drosophila melanogaster)
Sf3b6 [nucleoplasm] (Mus musculus)
Sf3b6 [nucleoplasm] (Rattus norvegicus)
Cross References
RefSeq
NP_057131.1
Target Pathogen
5b354852be737e166372ed9c
OpenTargets
ENSG00000115128
GeneCards
Q9Y3B4
HPA
ENSG00000115128-SF3B6
Ensembl
ENSP00000233468
,
ENSG00000115128
,
ENST00000233468
PRO
Q9Y3B4
PDB
6FF7
,
5Z58
,
2F9J
,
5Z56
,
6AH0
,
2FHO
,
6FF4
,
6Y53
,
6Y5Q
,
3LQV
,
5Z57
,
2F9D
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P19320 VCAM1
1
VCAM1 [plasma membrane]
(R-HSA-197834)
0.527
4
UniProt:Q9H7X7 IFT22
2
RABL5 [ciliary tip]
(R-HSA-5625388)
RABL5 [cilium]
(R-HSA-5617605)
0.508
2
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