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DDX39B [nucleoplasm]
Stable Identifier
R-HSA-8849139
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Spliceosome RNA helicase DDX39B ecNumber3.6.4.13/ecNumber, DX39B_HUMAN, UAP56
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Transcription Termination (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
DDX39B:ADP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
mRNA 3'-end processing (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
mRNA polyadenylation (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q13838 DDX39B
Gene Names
DDX39B, BAT1, UAP56
Chain
initiator methionine:1, chain:2-428
Reference Genes
BioGPS Gene:7919 DDX39B
COSMIC (genes):DDX39B DDX39B
CTD Gene:7919 DDX39B
dbSNP Gene:7919 DDX39B
ENSEMBL:ENSG00000198563 DDX39B
ENSEMBL:ENSG00000215425 DDX39B
ENSEMBL:ENSG00000225073 DDX39B
ENSEMBL:ENSG00000225859 DDX39B
ENSEMBL:ENSG00000229496 DDX39B
ENSEMBL:ENSG00000230624 DDX39B
ENSEMBL:ENSG00000235439 DDX39B
HGNC:13917 DDX39B
KEGG Gene (Homo sapiens):7919 DDX39B
Monarch:7919 DDX39B
NCBI Gene:7919 DDX39B
OMIM:142560 DDX39B
UCSC:Q13838 DDX39B
Reference Transcript
RefSeq:NM_004640.6 DDX39B
RefSeq:NM_080598.5 DDX39B
Other Identifiers
0004120433
0006020441
0006290494
11715525_a_at
11715527_x_at
11715528_a_at
11715529_x_at
11736015_a_at
17026742
17031799
17031849
17031855
17031857
17031860
17034271
17034321
17034327
17034329
17034332
17036519
17036569
17036575
17036577
17036580
17039314
17039362
17039368
17039370
17039373
18670465
18670467
18670468
18670469
18670470
18670471
18670474
18670480
18670485
18670486
18670487
18670496
18670497
18670498
18670499
18670507
18670508
18670509
18670510
200041_PM_s_at
200041_s_at
2949039
2949042
2949043
2949045
2949047
2949051
2949058
2949065
2949067
2949068
2949075
2949076
2949084
2949085
2949086
2949087
3394578
35292_at
72981_at
7892648
7893002
7894604
7894984
7895014
7895226
7895616
7895919
7896287
7896458
7919
8124926
8178476
8178508
8179750
A_24_P904903
GE79374
GO:0000166
GO:0000245
GO:0000346
GO:0000398
GO:0001889
GO:0003674
GO:0003676
GO:0003723
GO:0003724
GO:0004386
GO:0005515
GO:0005524
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005681
GO:0005687
GO:0005688
GO:0005737
GO:0006259
GO:0006397
GO:0006405
GO:0006406
GO:0006412
GO:0006810
GO:0006913
GO:0006950
GO:0007049
GO:0008150
GO:0008186
GO:0008283
GO:0008380
GO:0009058
GO:0010501
GO:0015031
GO:0016363
GO:0016607
GO:0016787
GO:0016887
GO:0017070
GO:0022607
GO:0022618
GO:0030154
GO:0030621
GO:0031124
GO:0032786
GO:0032991
GO:0034641
GO:0040007
GO:0042802
GO:0043008
GO:0043167
GO:0043226
GO:0044403
GO:0044877
GO:0045727
GO:0046784
GO:0048856
GO:0051028
GO:0061051
GO:0065003
GO:1904707
GO:2000002
GO:2000573
ILMN_1674778
ILMN_1686626
ILMN_1690576
ILMN_2357976
TC06003590.hg
Z37166_at
g4758111_3p_a_at
Participant Of
hasMember
DDX39A,B [nucleoplasm]
Inferred To
nadsyn1 [nucleoplasm] (Xenopus tropicalis)
Ddx39b [nucleoplasm] (Mus musculus)
Ddx39b [nucleoplasm] (Rattus norvegicus)
Hel25E [nucleoplasm] (Drosophila melanogaster)
DDX39B [nucleoplasm] (Canis familiaris)
ddx39b [nucleoplasm] (Danio rerio)
hel-1 [nucleoplasm] (Caenorhabditis elegans)
Cross References
RefSeq
NP_004631.1
,
NP_542165.1
Target Pathogen
5b354852be737e166372e89a
OpenTargets
ENSG00000198563
HPA
ENSG00000198563-DDX39B
GeneCards
Q13838
Ensembl
ENSG00000230624
,
ENSG00000235439
,
ENST00000383508
,
ENST00000396172
,
ENST00000431360
,
ENSG00000225859
,
ENSP00000379475
,
ENST00000458640
,
ENSP00000416269
,
ENSG00000198563
,
ENST00000414440
,
ENST00000448296
,
ENSG00000215425
,
ENST00000456476
,
ENSP00000373000
,
ENSP00000399030
,
ENSP00000400326
,
ENST00000430784
,
ENSP00000393712
,
ENST00000412330
,
ENSP00000405560
,
ENSP00000394160
,
ENSP00000390999
,
ENSP00000404695
,
ENSP00000391463
,
ENSP00000411853
,
ENST00000456666
,
ENSP00000398775
,
ENST00000416863
,
ENST00000415689
,
ENST00000453138
,
ENST00000400296
,
ENST00000400295
,
ENSP00000411136
,
ENST00000441425
,
ENSP00000387994
,
ENSP00000388880
,
ENST00000413678
,
ENSP00000383152
,
ENSG00000225073
,
ENSG00000229496
,
ENSP00000383151
,
ENST00000412106
,
ENSP00000407419
,
ENST00000445218
PRO
Q13838
HMDB Protein
HMDBP10642
PDB
1XTJ
,
1T6N
,
1XTK
,
1XTI
,
1T5I
Interactors (5)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9Y3Y2 CHTOP
1
CHTOP [nucleoplasm]
(R-HSA-8849147)
0.782
7
UniProt:Q86V81 ALYREF
2
ALYREF [cytosol]
(R-HSA-158482)
ALYREF [nucleoplasm]
(R-HSA-156649)
0.702
4
UniProt:P82979 SARNP
1
SARNP [nucleoplasm]
(R-HSA-8849146)
0.666
4
UniProt:O00560 SDCBP
3
SDCBP [azurophil granule lumen]
(R-HSA-6799372)
SDCBP [extracellular region]
(R-HSA-6806206)
SDCBP [cytosol]
(R-HSA-373639)
0.556
3
UniProt:P38919 EIF4A3
2
EIF4A3 [nucleoplasm]
(R-HSA-8849149)
EIF4A3 [cytosol]
(R-HSA-927868)
0.462
2
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