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DDX39B [nucleoplasm]
Stable Identifier
R-HSA-8849139
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Spliceosome RNA helicase DDX39B ecNumber3.6.4.13/ecNumber, DX39B_HUMAN, UAP56
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Transcription Termination (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
DDX39B:ADP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
mRNA 3'-end processing (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
mRNA polyadenylation (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
DDX39B:ATP [nucleoplasm] (Homo sapiens)
DDX39A,B [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Formation of the Spliceosomal A complex (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B* complex (Homo sapiens)
Spliceosomal B* complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal C* complex (Homo sapiens)
Spliceosomal C complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal P complex and exon ligation (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
DDX39B [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q13838 DDX39B
Gene Names
DDX39B, BAT1, UAP56
Chain
initiator methionine:, chain:2-428
Reference Genes
BioGPS Gene:7919 DDX39B
COSMIC (genes):DDX39B DDX39B
CTD Gene:7919 DDX39B
dbSNP Gene:7919 DDX39B
ENSEMBL:ENSG00000198563 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000198563.14 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000215425.11 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000225073.10 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000225859.10 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000229496.10 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000230624.10 DDX39B
ENSEMBL_homo_sapiens_GENE:ENSG00000235439.10 DDX39B
HGNC:13917 DDX39B
KEGG Gene (Homo sapiens):7919 DDX39B
Monarch:7919 DDX39B
NCBI Gene:7919 DDX39B
OMIM:142560 DDX39B
UCSC:Q13838 DDX39B
Reference Transcript
RefSeq:NM_004640.6 DDX39B
RefSeq:NM_080598.5 DDX39B
Other Identifiers
11715525_a_at
11715527_x_at
11715528_a_at
11715529_x_at
11736015_a_at
16655077
16655079
17026742
17031799
17031849
17031855
17031857
17031860
17034271
17034321
17034327
17034329
17034332
17036519
17036569
17036575
17036577
17036580
17039314
17039362
17039368
17039370
17039373
18670465
18670467
18670468
18670469
18670470
18670471
18670474
18670480
18670485
18670486
18670487
18670496
18670497
18670498
18670499
18670507
18670508
18670509
18670510
200041_PM_s_at
200041_s_at
2949039
2949042
2949043
2949045
2949047
2949051
2949058
2949065
2949067
2949068
2949075
2949076
2949084
2949085
2949086
2949087
3394578
35292_at
72981_at
7892648
7893002
7894604
7894984
7895014
7895226
7895616
7895919
7896287
7896458
7919
8124926
8178476
8178508
8179750
A_24_P904903
GE79374
GO:0000166
GO:0000245
GO:0000346
GO:0000398
GO:0003676
GO:0003723
GO:0003724
GO:0003824
GO:0004386
GO:0005515
GO:0005524
GO:0005634
GO:0005654
GO:0005681
GO:0005687
GO:0005688
GO:0005737
GO:0006351
GO:0006355
GO:0006397
GO:0006405
GO:0006406
GO:0006913
GO:0008186
GO:0008380
GO:0010501
GO:0016071
GO:0016607
GO:0016787
GO:0016887
GO:0017070
GO:0023052
GO:0030621
GO:0032786
GO:0042802
GO:0043008
GO:0043226
GO:0046784
GO:0051028
GO:0065003
GO:0140098
GO:0140657
GO:2000002
HMNXSV003026047
ILMN_1674778
ILMN_1686626
ILMN_1690576
ILMN_2357976
TC06003590.hg
Z37166_at
g4758111_3p_a_at
Participates
as a component of
Spliceosomal B* complex [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
Spliceosomal C complex [nucleoplasm] (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
as an input of
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
as an output of
Formation of the Spliceosomal P complex and exon ligation (Homo sapiens)
as a member of
DDX39A,B [nucleoplasm] (Homo sapiens)
Other forms of this molecule
DDX39B [cytosol]
Inferred To
DDX39B [nucleoplasm]
(Bos taurus)
DDX39B [nucleoplasm]
(Caenorhabditis elegans)
DDX39B [nucleoplasm]
(Canis familiaris)
DDX39B [nucleoplasm]
(Drosophila melanogaster)
DDX39B [nucleoplasm]
(Mus musculus)
DDX39B [nucleoplasm]
(Plasmodium falciparum)
DDX39B [nucleoplasm]
(Rattus norvegicus)
DDX39B [nucleoplasm]
(Schizosaccharomyces pombe)
DDX39B [nucleoplasm]
(Sus scrofa)
ddx39b [nucleoplasm]
(Xenopus tropicalis)
bat1 [nucleoplasm]
(Danio rerio)
Ghost homologue of DDX39B [nucleoplasm]
(Gallus gallus)
uap56 [nucleoplasm]
(Dictyostelium discoideum)
Cross References
RefSeq
NP_004631.1
,
NP_542165.1
OpenTargets
ENSG00000198563
IntEnz
3.6.4.13
GeneCards
Q13838
HPA
ENSG00000198563-DDX39B
Ensembl
ENST00000448296
,
ENSG00000229496
,
ENST00000413678
,
ENST00000383508
,
ENSG00000198563
,
ENSP00000387994
,
ENST00000441425
,
ENSP00000388880
,
ENST00000416863
,
ENSP00000383151
,
ENST00000415689
,
ENSP00000404695
,
ENSP00000405560
,
ENSG00000225073
,
ENSP00000383152
,
ENST00000412106
,
ENST00000445218
,
ENSP00000407419
,
ENSP00000400326
,
ENSP00000411136
,
ENSP00000379475
,
ENST00000453138
,
ENSP00000416269
,
ENST00000458640
,
ENSG00000225859
,
ENST00000431360
,
ENST00000456666
,
ENST00000396172
,
ENSP00000411853
,
ENSP00000398775
,
ENSP00000391463
,
ENSG00000230624
,
ENST00000400295
,
ENST00000430784
,
ENSP00000393712
,
ENSP00000394160
,
ENSP00000373000
,
ENSG00000235439
,
ENST00000400296
,
ENST00000456476
,
ENSP00000390999
,
ENST00000414440
,
ENST00000412330
,
ENSG00000215425
,
ENSP00000399030
PRO
Q13838
Pharos - Targets
Q13838
HMDB Protein
HMDBP10642
PDB
1XTJ
,
1T5I
,
7APK
,
1T6N
,
7ZNK
,
1XTK
,
1XTI
,
7ZNL
Interactors (20)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9Y3Y2 CHTOP
1
CHTOP [nucleoplasm]
(R-HSA-8849147)
0.782
7
UniProt:Q86V81 ALYREF
2
ALYREF [nucleoplasm]
(R-HSA-156649)
ALYREF [cytosol]
(R-HSA-158482)
0.702
4
UniProt:O00148 DDX39A
1
DDX39A [nucleoplasm]
(R-HSA-8852237)
0.666
4
UniProt:Q13838 DDX39B
2
DDX39B [cytosol]
(R-HSA-9715154)
DDX39B [nucleoplasm]
(R-HSA-8849139)
0.666
4
UniProt:P82979 SARNP
1
SARNP [nucleoplasm]
(R-HSA-8849146)
0.666
4
UniProt:Q53F19 NCBP3
0.643
5
UniProt:Q96FV9 THOC1
1
THOC1 [nucleoplasm]
(R-HSA-8849130)
0.643
3
IntAct:EBI-16428938 CCSB ISOFORM ID
0.556
3
UniProt:P09012 SNRPA
1
SNRPA [nucleoplasm]
(R-HSA-71915)
0.556
3
UniProt:O00560 SDCBP
3
SDCBP [extracellular region]
(R-HSA-6806206)
SDCBP [azurophil granule lumen]
(R-HSA-6799372)
SDCBP [cytosol]
(R-HSA-373639)
0.556
3
UniProt:Q9Y3Y2-3 CHTOP
0.556
5
UniProt:Q9P127 LUZP4
1
LUZP4 [nucleoplasm]
(R-HSA-8852185)
0.556
3
UniProt:Q7KZS0 Q7KZS0
0.556
3
UniProt:P78317 RNF4
2
RNF4 [nucleoplasm]
(R-HSA-5684076)
RNF4 [cytosol]
(R-HSA-975974)
0.556
3
UniProt:P26368-2 U2AF2
0.556
3
UniProt:Q8NI27 THOC2
1
THOC2 [nucleoplasm]
(R-HSA-8849134)
0.527
2
UniProt:Q96QD9 FYTTD1
1
FYTTD1 [nucleoplasm]
(R-HSA-8852176)
0.524
3
UniProt:Q2HR75 ICP27
0.499
2
UniProt:P13569 CFTR
17
PolyUb-CFTR [clathrin-coated endocytic vesicle membrane]
(R-HSA-8869104)
PolyUb-CFTR [plasma membrane]
(R-HSA-8867595)
CFTR [lysosomal membrane]
(R-HSA-5627279)
CFTR [Golgi-associated vesicle membrane]
(R-HSA-5627079)
CFTR [endosome membrane]
(R-HSA-6782965)
PolyUb-CFTR [endosome membrane]
(R-HSA-6782976)
CFTR F508del [endoplasmic reticulum membrane]
(R-HSA-8866834)
ub-CFTR F508del [cytosol]
(R-HSA-8866838)
ub-CFTR F508del [endoplasmic reticulum membrane]
(R-HSA-8866842)
CFTR G542* [plasma membrane]
(R-HSA-5678986)
CFTR G551D [plasma membrane]
(R-HSA-5678977)
CFTR W1282* [plasma membrane]
(R-HSA-5678976)
CFTR F508del [plasma membrane]
(R-HSA-5678978)
CFTR N1303K [plasma membrane]
(R-HSA-5678983)
CFTR [plasma membrane]
(R-HSA-383188)
CFTR [endoplasmic reticulum membrane]
(R-HSA-8866837)
misfolded CFTR [endoplasmic reticulum membrane]
(R-HSA-8868730)
0.483
5
UniProt:P38919 EIF4A3
2
EIF4A3 [nucleoplasm]
(R-HSA-8849149)
EIF4A3 [cytosol]
(R-HSA-927868)
0.462
2
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