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PRPF40A [nucleoplasm]
Stable Identifier
R-HSA-8867890
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Pre-mRNA-processing factor 40 homolog A, PR40A_HUMAN, FBP11
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Formation of the Spliceosomal A complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Spliceosomal E complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal E complex (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Spliceosomal E complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
PRPF40A [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:O75400 PRPF40A
Gene Names
PRPF40A, FBP11, FLAF1, FNBP3, HIP10, HYPA, HSPC225
Chain
chain:1-957
Reference Genes
BioGPS Gene:55660 PRPF40A
COSMIC (genes):PRPF40A PRPF40A
CTD Gene:55660 PRPF40A
dbSNP Gene:55660 PRPF40A
ENSEMBL:ENSG00000196504 PRPF40A
ENSEMBL_homo_sapiens_GENE:ENSG00000196504.21 PRPF40A
HGNC:16463 PRPF40A
KEGG Gene (Homo sapiens):55660 PRPF40A
Monarch:55660 PRPF40A
NCBI Gene:55660 PRPF40A
OMIM:612941 PRPF40A
UCSC:O75400 PRPF40A
Reference Transcript
RefSeq:NM_017892.3 PRPF40A
Other Identifiers
11743382_a_at
11743383_at
11743385_a_at
11743386_s_at
16903815
213729_PM_at
213729_at
214941_PM_s_at
214941_s_at
218053_PM_at
218053_at
233080_PM_s_at
233080_s_at
236477_PM_at
236477_at
2581556
2581557
2581558
2581559
2581562
2581564
2581565
2581566
2581568
2581569
2581570
2581571
2581572
2581573
2581574
2581576
2581577
2581579
2581580
2581581
2581582
2581583
2581585
2581586
2581587
2581588
2581589
2581590
2581593
2581595
2581598
2581603
2581604
2581605
2581606
37506_at
37507_i_at
42279_at
55660
56362_at
8055913
A_23_P16762
GE85206
GO:0000398
GO:0000910
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005685
GO:0006397
GO:0007010
GO:0007049
GO:0008360
GO:0008380
GO:0016020
GO:0016071
GO:0016363
GO:0016477
GO:0016607
GO:0032465
GO:0043226
GO:0045292
GO:0048856
GO:0048870
GO:0051301
GO:0071004
HMNXSV003019991
Hs.104030.0.A1_3p_at
Hs.107213.1.S1_3p_a_at
Hs.119325.0.S1_3p_at
Hs.119325.1.S1_3p_a_at
ILMN_1659854
PH_hs_0023587
TC02004643.hg
TC02004644.hg
g8923548_3p_at
Participates
as an output of
Formation of the Spliceosomal B complex (Homo sapiens)
as an input of
Formation of the Spliceosomal E complex (Homo sapiens)
as a component of
Spliceosomal E complex [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
Inferred To
prp40 [nucleoplasm]
(Dictyostelium discoideum)
prp40 [nucleoplasm]
(Schizosaccharomyces pombe)
Ghost homologue of PRPF40A [nucleoplasm]
(Plasmodium falciparum)
Ghost homologue of PRPF40A [nucleoplasm]
(Xenopus tropicalis)
PRPF40A [nucleoplasm]
(Bos taurus)
PRPF40A [nucleoplasm]
(Caenorhabditis elegans)
PRPF40A [nucleoplasm]
(Canis familiaris)
PRPF40A [nucleoplasm]
(Gallus gallus)
PRPF40A [nucleoplasm]
(Sus scrofa)
Prp40 [nucleoplasm]
(Drosophila melanogaster)
Prpf40a [nucleoplasm]
(Mus musculus)
Prpf40a [nucleoplasm]
(Rattus norvegicus)
Cross References
RefSeq
NP_060362.3
OpenTargets
ENSG00000196504
GeneCards
O75400
Ensembl
ENSP00000346332
,
ENST00000696381
,
ENSG00000196504
,
ENST00000354363
,
ENSP00000512591
PRO
O75400
Pharos - Targets
O75400
PDB
2CQN
,
1YWJ
,
2DYF
,
2KZG
,
1YWI
,
2L9V
,
1UZC
,
2LKS
,
2L5F
,
1ZR7
Interactors (9)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P42858 HTT
1
HTT [nucleoplasm]
(R-HSA-9023590)
0.743
15
UniProt:Q9BUJ2 HNRNPUL1
1
HNRNPUL1 [nucleoplasm]
(R-HSA-72106)
0.553
2
UniProt:Q9NRR5 UBQL4
0.553
2
UniProt:Q9H190 SDCB2
0.553
2
UniProt:Q53F19 NCBP3
0.527
2
UniProt:Q15459 SF3A1
1
SF3A1 [nucleoplasm]
(R-HSA-71962)
0.508
2
UniProt:Q8N5F7 NKAP
1
NKAP [nucleoplasm]
(R-HSA-9769602)
0.508
2
UniProt:Q12873 CHD3
2
CHD3 [nucleoplasm]
(R-HSA-4657012)
monoSUMO1-K1971-CHD3 [nucleoplasm]
(R-HSA-8956372)
0.508
2
UniProt:Q15637 SF1
1
SF1 [nucleoplasm]
(R-HSA-8865928)
0.482
3
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