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LDB1 [nucleoplasm]
Stable Identifier
R-HSA-8956515
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
LIM domain-binding protein 1, LDB1_HUMAN, CLIM2, Carboxyl-terminal LIM domain-binding protein 2
Locations in the PathwayBrowser
Expand all
Developmental Biology (Homo sapiens)
Cardiogenesis (Homo sapiens)
Expression of HAND2 in cardiogenesis (Homo sapiens)
GATA4:GATA6:ISL1:LDB1:HAND2 gene [nucleoplasm] (Homo sapiens)
ISL1:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
Expression of MEF2C in cardiogenesis (Homo sapiens)
GATA4:ISL1:LDB1:NKX2-5:TBX20:MEF2C gene [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
GATA4, GATA6, and ISL1:LDB1 bind the HAND2 gene (Homo sapiens)
GATA4:GATA6:ISL1:LDB1:HAND2 gene [nucleoplasm] (Homo sapiens)
ISL1:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
GATA4, ISL1:LDB1, TBX20, and NKX2-5 bind the MEF2C gene (Homo sapiens)
GATA4:ISL1:LDB1:NKX2-5:TBX20:MEF2C gene [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
Nervous system development (Homo sapiens)
Axon guidance (Homo sapiens)
Signaling by ROBO receptors (Homo sapiens)
Regulation of expression of SLITs and ROBOs (Homo sapiens)
ISL1 binds the SLIT2 gene enhancer (Homo sapiens)
ISL1:LHX3/4:LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX4:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3/4:LDB1:SLIT2 gene [nucleoplasm] (Homo sapiens)
ISL1:LHX3/4:LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX4:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
SLIT2 gene expression is stimulated by ISL1 (Homo sapiens)
ISL1:LHX3/4:LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX4:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3/4:LDB1:SLIT2 gene [nucleoplasm] (Homo sapiens)
ISL1:LHX3/4:LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX3:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
ISL1:LHX4:LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
Generic Transcription Pathway (Homo sapiens)
Transcriptional regulation by RUNX1 (Homo sapiens)
RUNX1 regulates transcription of genes involved in differentiation of HSCs (Homo sapiens)
MYB gene transcription is stimulated by the RUNX1-containing TAL1 complex (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex,MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex:MYB gene [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex,MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1 binds the core TAL1 complex (Homo sapiens)
RUNX1:CBFB:TAL1 core complex [nucleoplasm] (Homo sapiens)
TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1-containing TAL1 complex binds the MYB gene enhancer (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex,MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex:MYB gene [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex,MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
MYB:RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
Sensory Perception (Homo sapiens)
Olfactory Signaling Pathway (Homo sapiens)
Expression and translocation of olfactory receptors (Homo sapiens)
Expression of Olfactory Receptor (Homo sapiens)
EBF1:LDB1:LHX2:Intergenic olfactory enhancer:Olfactory Receptor gene [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
LHX2, LDB1, and EBF1 bind Olfactory Receptor gene and intergenic olfactory enhancers (Homo sapiens)
EBF1:LDB1:LHX2:Intergenic olfactory enhancer:Olfactory Receptor gene [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
LDB1 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q86U70 LDB1
Gene Names
LDB1, CLIM2
Chain
initiator methionine:, chain:2-411
Reference Genes
BioGPS Gene:8861 LDB1
COSMIC (genes):LDB1 LDB1
CTD Gene:8861 LDB1
dbSNP Gene:8861 LDB1
ENSEMBL:ENSG00000198728 LDB1
ENSEMBL_homo_sapiens_GENE:ENSG00000198728.11 LDB1
HGNC:6532 LDB1
KEGG Gene (Homo sapiens):8861 LDB1
Monarch:8861 LDB1
NCBI Gene:8861 LDB1
OMIM:603451 LDB1
UCSC:Q86U70 LDB1
Reference Transcript
RefSeq:NM_001113407.2 LDB1
RefSeq:NM_003893.4 LDB1
Other Identifiers
11747711_a_at
11757821_s_at
16717869
203451_PM_at
203451_at
3304221
3304222
3304223
3304224
3304225
3304226
3304227
3304228
3304231
3304232
3304233
3304234
3304237
3304238
3304239
3304240
3304241
3304247
3304249
3304250
3304251
35160_PM_at
35160_at
4870487C_3p_at
57827_at
7935968
8861
A_23_P97892
GE54588
GO:0000122
GO:0000785
GO:0000972
GO:0001702
GO:0001942
GO:0002376
GO:0003677
GO:0003682
GO:0003713
GO:0005515
GO:0005634
GO:0005654
GO:0005667
GO:0005694
GO:0006351
GO:0006355
GO:0006366
GO:0007155
GO:0007399
GO:0009948
GO:0010669
GO:0016055
GO:0019899
GO:0021549
GO:0021702
GO:0022607
GO:0023052
GO:0030154
GO:0030182
GO:0030274
GO:0030334
GO:0031252
GO:0032968
GO:0032991
GO:0034330
GO:0035019
GO:0042802
GO:0042803
GO:0043226
GO:0043549
GO:0043621
GO:0045647
GO:0045785
GO:0045892
GO:0045944
GO:0046985
GO:0048856
GO:0048870
GO:0051893
GO:0060322
GO:0061629
GO:0090575
GO:0140110
GO:0140297
GO:1990907
HMNXSV003055463
ILMN_1811347
PH_hs_0002290
TC10001617.hg
g4504968_3p_s_at
Participates
as a component of
GATA4:ISL1:LDB1:NKX2-5:TBX20:MEF2C gene [nucleoplasm] (Homo sapiens)
LDB1 homodimer [nucleoplasm] (Homo sapiens)
GATA3-TAL1 core complex [nucleoplasm] (Homo sapiens)
TAL1 core complex [nucleoplasm] (Homo sapiens)
Inferred To
LDB1 [nucleoplasm]
(Bos taurus)
LDB1 [nucleoplasm]
(Canis familiaris)
LDB1 [nucleoplasm]
(Gallus gallus)
LDB1 [nucleoplasm]
(Sus scrofa)
Chi [nucleoplasm]
(Drosophila melanogaster)
Ldb1 [nucleoplasm]
(Mus musculus)
Ldb1 [nucleoplasm]
(Rattus norvegicus)
Cross References
RefSeq
NP_001106878.1
,
NP_003884.1
OpenTargets
ENSG00000198728
GeneCards
Q86U70
HPA
ENSG00000198728-LDB1
Ensembl
ENSP00000501277
,
ENSP00000354616
,
ENST00000673968
,
ENSG00000198728
,
ENST00000361198
PRO
Q86U70
Pharos - Targets
Q86U70
PDB
2XJY
,
7OB8
,
8SSU
,
6TYD
,
2YPA
,
2XJZ
,
7OB5
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P17542 TAL1
1
TAL1 [nucleoplasm]
(R-HSA-8956511)
0.597
3
UniProt:P50458 LHX2
1
LHX2 [nucleoplasm]
(R-HSA-9011100)
0.594
3
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