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SLIRP [mitochondrial matrix]
Stable Identifier
R-HSA-9837039
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
mitochondrial matrix
Synonyms
SRA stem-loop-interacting RNA-binding protein, mitochondrial, SLIRP_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Mitochondrial RNA degradation (Homo sapiens)
SLIRP:LRPPRC binds mitochondrial RNAs (Homo sapiens)
SLIRP:LRPPRC [mitochondrial matrix] (Homo sapiens)
SLIRP [mitochondrial matrix] (Homo sapiens)
SLIRP:LRPPRC:12S rRNA,16S rRNA,MT-ATP6,8,MT-CO1,2,3,MT-ND1,2,34,4L,5,6 mRNA [mitochondrial matrix] (Homo sapiens)
SLIRP:LRPPRC [mitochondrial matrix] (Homo sapiens)
SLIRP [mitochondrial matrix] (Homo sapiens)
SUPV3L1:PNPT1 hydrolyzes mitochondrial RNA to yield 4-5 nucleotide oligoribonucleotides (Homo sapiens)
SLIRP:LRPPRC [mitochondrial matrix] (Homo sapiens)
SLIRP [mitochondrial matrix] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q9GZT3 SLIRP
Gene Names
SLIRP, C14orf156, DC23, DC50, PD04872
Chain
transit peptide:1-, chain:-109
Reference Genes
BioGPS Gene:81892 SLIRP
COSMIC (genes):SLIRP SLIRP
CTD Gene:81892 SLIRP
dbSNP Gene:81892 SLIRP
ENSEMBL:ENSG00000119705 SLIRP
HGNC:20495 SLIRP
Monarch:81892 SLIRP
NCBI Gene:81892 SLIRP
OMIM:610211 SLIRP
UCSC:Q9GZT3 SLIRP
Reference Transcript
RefSeq:NM_001267864.1 SLIRP
RefSeq:NM_031210.5 SLIRP
RefSeq:NM_001267863.1 SLIRP
Other Identifiers
11716270_a_at
1564816_at
16786966
221434_PM_s_at
221434_s_at
3545526
3545527
3545528
3545529
3545530
3545532
3545534
3545535
3545536
3545552
3545553
3545554
65748_at
7975989
81892
A_23_P128991
GE79487
GO:0000961
GO:0001669
GO:0003676
GO:0003723
GO:0005515
GO:0005634
GO:0005737
GO:0005739
GO:0005759
GO:0005929
GO:0007005
GO:0007018
GO:0007286
GO:0007338
GO:0008380
GO:0022414
GO:0030317
GO:0031410
GO:0036126
GO:0043226
GO:0043231
GO:0048471
GO:0048856
GO:0048870
GO:1990904
HMNXSV003030019
HMNXSV003054699
ILMN_1661945
PH_hs_0016142
TC14002203.hg
g13654277_3p_s_at
p24990
Participates
as a component of
SLIRP:LRPPRC [mitochondrial matrix] (Homo sapiens)
Cross References
ENSEMBL
ENSP00000450909
,
ENST00000238688
,
ENST00000557342
,
ENSP00000238688
OpenTargets
ENSG00000119705
HPA
ENSG00000119705-SLIRP
PRO
Q9GZT3
Pharos - Targets
Q9GZT3
GlyGen
Q9GZT3
PDB
8ANY
Interactors (3)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:O14561 NDUFAB1
4
octanoyl-S112-NDUFAB1 [mitochondrial inner membrane]
(R-HSA-9857608)
NDUFAB1 [mitochondrial inner membrane]
(R-HSA-163925)
PPANT-S112-NDUFAB1 [mitochondrial inner membrane]
(R-HSA-8933545)
Mal-PPANT-S112-NDUFAB1 [mitochondrial inner membrane]
(R-HSA-8934586)
0.675
4
UniProt:Q9NRD5 PICK1
2
PICK1 [plasma membrane]
(R-HSA-416989)
PICK1 [endocytic vesicle membrane]
(R-HSA-417017)
0.556
3
UniProt:P05919 vpu
6
VPU (P05919) protein [cytosol]
(R-HIV-173223)
VPU (P05919) [endoplasmic reticulum membrane]
(R-HIV-180550)
VPU (P05919) protein [extracellular region]
(R-HIV-175522)
VPU (P05919) protein [nucleoplasm]
(R-HIV-175200)
VPU (P05919) [Golgi membrane]
(R-HIV-3149439)
VPU (P05919) [plasma membrane]
(R-HIV-3149423)
0.462
4
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