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Gpc6 [Golgi lumen]
Stable Identifier
R-RNO-2076534
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
Golgi lumen
Synonyms
Heparan-GPC6, A0A096MJY1
Locations in the PathwayBrowser
Expand all
Metabolism (Rattus norvegicus)
Metabolism of carbohydrates (Rattus norvegicus)
Glycosaminoglycan metabolism (Rattus norvegicus)
Heparan sulfate/heparin (HS-GAG) metabolism (Rattus norvegicus)
HS-GAG biosynthesis (Rattus norvegicus)
EXT1:EXT2 transfers GlcNAc to heparan (Rattus norvegicus)
Heparan-PGs [Golgi lumen] (Rattus norvegicus)
Gpc6 [Golgi lumen] (Rattus norvegicus)
EXT1:EXT2 transfers GlcNAc to the terminal GlcA residue (Rattus norvegicus)
Heparan-PGs [Golgi lumen] (Rattus norvegicus)
Gpc6 [Golgi lumen] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:A0A096MJY1
Gene Names
Gpc6
Reference Genes
BioGPS Gene:691984 Gpc6
ENSEMBL:ENSRNOG00000046660
ENSEMBL:ENSRNOG00000046660 Gpc6
KEGG Gene (Rattus norvegicus):691984 Gpc6
Monarch:691984 Gpc6
NCBI Gene:691984 Gpc6
Reference Transcript
RefSeq:XM_001077762.6 Gpc6
RefSeq:XM_003752844.4 Gpc6
Other Identifiers
10781999
17700650
5711715
5712513
5791352
6113150
6220851
6345105
6483508
6572549
6601632
6675657
6706085
691984
A_43_P21348
GO:0005575
GO:0005576
GO:0005886
GO:0007155
GO:0007165
GO:0008150
GO:0009966
GO:0009986
GO:0016020
GO:0016477
GO:0022607
GO:0031012
GO:0031225
GO:0034330
GO:0040011
GO:0045202
GO:0046658
GO:0048856
GO:0048870
GO:0062023
GO:0098696
GO:0098978
GO:0099560
GO:1905475
GO:1905606
ILMN_1650214
Participant Of
hasMember
Heparan-PGs [Golgi lumen]
Other forms of this molecule
Gpc6 [plasma membrane]
Gpc6 [lysosomal lumen]
Gpc6 [lysosomal lumen]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [plasma membrane]
Inferred From
Heparan-GPC6 [Golgi lumen] (Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63645) at unknown position
Modification
alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
XP_001077762.3
,
XP_003752892.1
Ensembl
ENSRNOP00000068304
,
ENSRNOG00000046660
,
ENSRNOT00000076400
RGD
1593308
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