Toggle navigation
About
What is Reactome ?
News
Team
Scientific Advisory Board
Editorial Calendar
Release Calendar
Statistics
Our Logo
License Agreement
Privacy Notice
Disclaimer
Digital Preservation
Contact us
Content
Table of Contents
DOIs
Data Schema
Reactome Research Spotlight
ORCID Integration Project
COVID-19 Disease Pathways
Docs
Userguide
Pathway Browser
How do I search ?
Details Panel
Analysis Tools
Analysis Data
Analysis Gene Expression
Species Comparison
Tissue Distribution
Diseases
Cytomics
Review Status of Reactome Events
ReactomeFIViz
Developer's Zone
Graph Database
Analysis Service
Content Service
Pathways Overview
Pathway Diagrams
Icon Info
EHLD Specs & Guidelines
Icon Library Guidelines
Data Model
Computationally inferred events
FAQ
Linking to Us
Citing us
Tools
Pathway Browser
Analyse gene list
Analyse gene expression
Species Comparison
Tissue Distribution
Analysis Service
Content Service
ReactomeFIViz
Overlays
DisGeNET
Web
API
Advanced Data Search
Site Search
Community
Icon Library
Outreach
Events
Training
Publications
Partners
Contributors
Papers Citing Us
Resources Guide
Collaboration
Download
About
What is Reactome ?
News
Team
Scientific Advisory Board
Editorial Calendar
Release Calendar
Statistics
Our Logo
License Agreement
Privacy Notice
Disclaimer
Digital Preservation
Contact us
Content
Table of Contents
DOIs
Data Schema
Reactome Research Spotlight
ORCID Integration Project
COVID-19 Disease Pathways
Docs
Userguide
Pathway Browser
How do I search ?
Details Panel
Analysis Tools
Analysis Data
Analysis Gene Expression
Species Comparison
Tissue Distribution
Diseases
Cytomics
Review Status of Reactome Events
ReactomeFIViz
Developer's Zone
Graph Database
Analysis Service
Content Service
Pathways Overview
Pathway Diagrams
Icon Info
EHLD Specs & Guidelines
Icon Library Guidelines
Data Model
Computationally inferred events
FAQ
Linking to Us
Citing us
Tools
Pathway Browser
Analyse gene list
Analyse gene expression
Species Comparison
Tissue Distribution
Analysis Service
Content Service
ReactomeFIViz
Overlays
DisGeNET
Web
API
Advanced Data Search
Site Search
Community
Icon Library
Outreach
Events
Training
Publications
Partners
Contributors
Papers Citing Us
Resources Guide
Collaboration
Download
Search ...
Go!
Gpc6 [plasma membrane]
Stable Identifier
R-RNO-2076687
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
plasma membrane
Synonyms
HS(2)-GPC6, A0A8I6A609
Locations in the PathwayBrowser
Expand all
Metabolism (Rattus norvegicus)
Metabolism of carbohydrates (Rattus norvegicus)
Glycosaminoglycan metabolism (Rattus norvegicus)
Heparan sulfate/heparin (HS-GAG) metabolism (Rattus norvegicus)
HS-GAG biosynthesis (Rattus norvegicus)
Some HSPGs are secreted to the plasma membrane (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
Metabolism of vitamins and cofactors (Rattus norvegicus)
Metabolism of fat-soluble vitamins (Rattus norvegicus)
Retinoid metabolism and transport (Rattus norvegicus)
CR:atREs binds apoE and HSPG (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
LRPs transport extracellular CR:atREs:HSPG:apoE to cytosol (Rattus norvegicus)
CR:atREs:HSPG:apoE [early endosome] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
Sensory Perception (Rattus norvegicus)
Visual phototransduction (Rattus norvegicus)
Retinoid metabolism and transport (Rattus norvegicus)
CR:atREs binds apoE and HSPG (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
LRPs transport extracellular CR:atREs:HSPG:apoE to cytosol (Rattus norvegicus)
CR:atREs:HSPG:apoE [early endosome] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Gpc6 [plasma membrane] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:A0A8I6A609
Gene Names
Gpc6
Reference Genes
BioGPS Gene:691984 Gpc6
ENSEMBL:ENSRNOG00000046660
ENSEMBL:ENSRNOG00000046660.4 Gpc6
Monarch:691984 Gpc6
NCBI Gene:691984 Gpc6
Reference Transcript
RefSeq:XM_003751533.4 Gpc6
RefSeq:XM_002725130.5 Gpc6
Other Identifiers
10781999
17700650
5711715
5712513
5791352
6113150
6192351
6220851
6345105
6483508
6572549
6601632
6675657
6706085
691984
A_43_P21348
GO:0005886
GO:0009966
GO:0016477
GO:0023052
GO:0030312
GO:0031012
GO:0048870
GO:0062023
ILMN_1650214
Participates
as a member of
HS(2)-PGs [plasma membrane] (Rattus norvegicus)
Other forms of this molecule
Gpc6 [lysosomal lumen]
Gpc6 [lysosomal lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [plasma membrane]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Gpc6 [Golgi lumen]
Inferred From
HS(2)-GPC6 [plasma membrane]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63653) at unknown position
Modification
beta-D-GlcA-(1->4)-alpha-D-GlcNS-(1->4)-beta-D-IdoA-(1->4)-alpha-D-GlcNS-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
XP_003751581.1
,
XP_002725176.1
Ensembl
ENSRNOG00000046660
,
ENSRNOT00000119031
,
ENSRNOP00000086451
RGD
1593308
© 2024
Reactome
Cite Us!
Cite Us!
Cite Us!
Warning!
Unable to extract citation. Please try again later.
Download As:
BibTeX
RIS
Text