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Taf9 [nucleoplasm]
Stable Identifier
R-RNO-212452
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
nucleoplasm
Synonyms
TAF9, Q5BKE0
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Rattus norvegicus)
RNA Polymerase II Transcription (Rattus norvegicus)
Generic Transcription Pathway (Rattus norvegicus)
Transcriptional Regulation by TP53 (Rattus norvegicus)
Regulation of TP53 Activity (Rattus norvegicus)
Regulation of TP53 Activity through Phosphorylation (Rattus norvegicus)
TAF1 phosphorylates TP53 (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Pre-transcription Events (Rattus norvegicus)
Abortive Initiation Before Second Transition (Rattus norvegicus)
Pol II Promoter Escape Complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Abortive initiation after formation of the first phosphodiester bond (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II transcription complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Fall Back to Closed Pre-initiation Complex (Rattus norvegicus)
pol II closed pre-initiation complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II open pre-initiation complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Transcription Initiation And Promoter Clearance (Rattus norvegicus)
RNA Polymerase II Promoter Escape (Rattus norvegicus)
Addition of Nucleotides 5 through 9 on the growing Transcript (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II transcription complex containing 4 nucleotide long transcript [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Addition of the fourth nucleotide on the Nascent Transcript: Second Transition (Rattus norvegicus)
pol II transcription complex containing 3 Nucleotide long transcript [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II transcription complex containing 4 nucleotide long transcript [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Addition of the third nucleotide on the nascent transcript (Rattus norvegicus)
pol II transcription complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II transcription complex containing 3 Nucleotide long transcript [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Unwinding DNA for the nascent transcript (Rattus norvegicus)
pol II transcription complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Unwinding of DNA for the Nascent Transcript: Second Transition (Rattus norvegicus)
pol II transcription complex containing 3 Nucleotide long transcript [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Promoter Opening: First Transition (Rattus norvegicus)
pol II closed pre-initiation complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II open pre-initiation complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Transcription Initiation (Rattus norvegicus)
NTP Binds Active Site of RNA Polymerase II (Rattus norvegicus)
Pol II initiation complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II open pre-initiation complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Newly Formed Phosphodiester Bond Stabilized and PPi Released (Rattus norvegicus)
Pol II Initiation complex with phosphodiester-PPi intermediate [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II transcription complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Nucleophillic Attack by 3'-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (Rattus norvegicus)
Pol II Initiation complex with phosphodiester-PPi intermediate [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Pol II initiation complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (Rattus norvegicus)
Binding of TFIIA and TFIIB to the pol II promoter:TFIID complex (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Binding of TFIIE to the growing preinitiation complex (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF:TFIIE complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Formation of the closed pre-initiation complex (Rattus norvegicus)
pol II closed pre-initiation complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF:TFIIE complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Recognition and Binding of Core Promoter Elements by TFIID (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Recruitment of RNA Polymerase II Holoenzyme by TFIIF to the pol II promoter:TFIID:TFIIA:TFIIB complex (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB:Pol II:TFIIF complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID:TFIIA:TFIIB complex [nucleoplasm] (Rattus norvegicus)
pol II promoter:TFIID complex [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II transcribes snRNA genes (Rattus norvegicus)
CBCAP complex binds 7-methylguanosine cap of snRNA (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
General transcription factors bind SNAPc:POU2F1:ZNF143:snRNA gene (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Integrator complex processes the 3' end of snRNA (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Pre-snRNA is elongated and capped with 7-methylguanosine (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
Pre-snRNA transcript initiation, Integrator binding, LEC binding (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
snTAFc [nucleoplasm] (Rattus norvegicus)
Taf9 [nucleoplasm] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:Q5BKE0
Gene Names
Taf9
Reference Genes
BioGPS Gene:373541 Taf9
ENSEMBL:ENSRNOG00000039848
ENSEMBL:ENSRNOG00000039848.6 Taf9
ENSEMBL:ENSRNOG00000051258
ENSEMBL:ENSRNOG00055027456
ENSEMBL:ENSRNOG00060027914
ENSEMBL:ENSRNOG00065022622
Monarch:373541 Taf9
NCBI Gene:373541 Taf9
UCSC:Q5BKE0 Taf9
Reference Transcript
RefSeq:NM_184048.2 Taf9
RefSeq:NM_001037310.1 Taf9
Other Identifiers
10812748
10832879
1375414_at
17735471
17758264
373541
5856084
5864738
5909121
5985105
6052712
6284653
6305743
6457270
6468717
6485491
6586672
6646279
6737877
A_44_P269125
GE1296800
GO:0000124
GO:0000492
GO:0000976
GO:0002039
GO:0003677
GO:0003713
GO:0003824
GO:0004402
GO:0005634
GO:0005654
GO:0005669
GO:0005694
GO:0006325
GO:0006338
GO:0006351
GO:0006352
GO:0006355
GO:0006357
GO:0012501
GO:0016071
GO:0016740
GO:0030163
GO:0032435
GO:0033276
GO:0036211
GO:0042789
GO:0043066
GO:0043226
GO:0045944
GO:0046982
GO:0050821
GO:0051117
GO:0051123
GO:0060261
GO:0060760
GO:0065003
GO:0070555
GO:0070742
GO:0070761
GO:0071339
GO:0140096
GO:0140110
GO:0140297
PH_rn_0018692
rc_AA944572_at
Participates
as a component of
snTAFc [nucleoplasm] (Rattus norvegicus)
TFIID [nucleoplasm] (Rattus norvegicus)
Inferred From
TAF9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_908937.2
,
NP_001032387.1
Ensembl
ENSRNOP00000068424
,
ENSRNOG00000039848
,
ENSRNOT00000076061
,
ENSRNOP00000068116
,
ENSRNOT00000076786
PRO
Q5BKE0
RGD
727861
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