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Nucleosome [nucleoplasm]
Stable Identifier
R-RNO-427402
Type
Complex
Species
Rattus norvegicus
Compartment
nucleoplasm
Locations in the PathwayBrowser
Expand all
Cellular responses to stimuli (Rattus norvegicus)
Cellular responses to stress (Rattus norvegicus)
Cellular Senescence (Rattus norvegicus)
Oxidative Stress Induced Senescence (Rattus norvegicus)
KDM6B demethylates H3K27me3 on p16INK4A promoter (Rattus norvegicus)
CDKN2A Gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2-EZH2 trimethylates nucleosomes associated with CDKN2A promoter (Rattus norvegicus)
CDKN2A Gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Senescence-Associated Secretory Phenotype (SASP) (Rattus norvegicus)
EHMT1:EHMT2 methylates IL6 promoter (Rattus norvegicus)
IL6 gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
EHMT1:EHMT2 methylates IL8 promoter (Rattus norvegicus)
IL8 gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Gene expression (Transcription) (Rattus norvegicus)
Epigenetic regulation of gene expression (Rattus norvegicus)
Negative epigenetic regulation of rRNA expression (Rattus norvegicus)
SIRT1 negatively regulates rRNA expression (Rattus norvegicus)
eNoSC deacetylates histone H3 (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
eNoSC dimethylates histone H3 at lysine-9 (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2 methylates histones and DNA (Rattus norvegicus)
DNMT1,3A,3B:PRC2 methylates cytosine and histone H3 (Rattus norvegicus)
DNMT1,3A,3B:PRC2:Chromatin [nucleoplasm] (Rattus norvegicus)
PRC2 Core:Chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2 recruits DNA methyltransferases (Rattus norvegicus)
DNMT1,3A,3B:PRC2:Chromatin [nucleoplasm] (Rattus norvegicus)
PRC2 Core:Chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2 Core:Chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2 trimethylates histone H3 at lysine-27 (Rattus norvegicus)
PRC2:Chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Polycomb Repressive Complex 2 (PRC2) Is recruited to chromatin (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
PRC2:Chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Positive epigenetic regulation of rRNA expression (Rattus norvegicus)
B-WICH complex positively regulates rRNA expression (Rattus norvegicus)
B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9 (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Regulation of endogenous retroelements (Rattus norvegicus)
Regulation of endogenous retroelements by KRAB-ZFP proteins (Rattus norvegicus)
ATF7IP:SETDB1 binds SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin (Rattus norvegicus)
ATF7IP:SETDB1:SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
CBX5 (HP-1alpha) binds TRIM28 (KAP1) in SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin (Rattus norvegicus)
CBX5:SUMO2-6K-TRIM28:KRAB-ZFP:retroelement [nucleoplasm] (Rattus norvegicus)
SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP binds retroelement DNA in chromatin (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
SETDB1 in ATF7IP:SETDB1:SUMO2-6K-TRIM28:KRAB-ZFP:retroelement trimethylates lysine-9 of histone H3 in nucleosomes (Rattus norvegicus)
ATF7IP:SETDB1:SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
KRAB-ZFP:retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex (Rattus norvegicus)
SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1 RNA trimethylates lysine-9 of histone H3 (H3K9me3) (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1HS,L1PA2,3 heterochromatin trimethylates lysine-9 of histone H3 in adjacent nucleosome (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Gene Silencing by RNA (Rattus norvegicus)
Transcriptional regulation by small RNAs (Rattus norvegicus)
AGO1,2:small RNA complexes interact with chromatin (Rattus norvegicus)
AGO1,2:miRNA:chromatin:RNA pol II [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
RNA Polymerase I Transcription (Rattus norvegicus)
RNA Polymerase I Promoter Clearance (Rattus norvegicus)
RNA Polymerase I Promoter Opening (Rattus norvegicus)
UBF-1 Binds rDNA Promoter (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
Signal Transduction (Rattus norvegicus)
Signaling by Nuclear Receptors (Rattus norvegicus)
ESR-mediated signaling (Rattus norvegicus)
Estrogen-dependent gene expression (Rattus norvegicus)
KDM4B demethylates H3K9me3 on estrogen-responsive target enhancers (Rattus norvegicus)
KDM4B-regulated genes:nucleosome:ESR1:ESTG [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
NR5A2, ZNF217 and NCOA3 bind GREB1 promoter (Rattus norvegicus)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
GREB1 gene:nucleosome:ESR1:ESTG:ZNF217:NCOA3:NR5A2 [nucleoplasm] (Rattus norvegicus)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Rattus norvegicus)
Nucleosome [nucleoplasm] (Rattus norvegicus)
General
This complex/polymer has been computationally inferred (based on PANTHER) from a complex/polymer involved in an event that has been demonstrated in another species.
Participants
components
x 2
Hist1h4b [nucleoplasm]
(Rattus norvegicus)
x 2
Histone H2A [nucleoplasm]
(Rattus norvegicus)
x 2
Histone H2B [nucleoplasm]
(Rattus norvegicus)
x 2
Histone H3 [nucleoplasm]
(Rattus norvegicus)
Participates
as a component of
KDM4B-regulated genes:nucleosome:ESR1:ESTG [nucleoplasm] (Rattus norvegicus)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Rattus norvegicus)
Retroelement chromatin [nucleoplasm] (Rattus norvegicus)
Chromatin [nucleoplasm] (Rattus norvegicus)
IL8 gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
IL6 gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
CDKN2A Gene:Nucleosome [nucleoplasm] (Rattus norvegicus)
as an input of
SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1HS,L1PA2,3 heterochromatin trimethylates lysine-9 of histone H3 in adjacent nucleosome (Rattus norvegicus)
SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1 RNA trimethylates lysine-9 of histone H3 (H3K9me3) (Rattus norvegicus)
B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9 (Rattus norvegicus)
This entity regulates
Negatively
UBF-1 Binds rDNA Promoter
(Rattus norvegicus)
Inferred From
Nucleosome [nucleoplasm]
(Homo sapiens)
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