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CDK9 [nucleoplasm]
Stable Identifier
R-RNO-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
nucleoplasm
Synonyms
Q641Z4
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Rattus norvegicus)
RNA Polymerase II Transcription (Rattus norvegicus)
Generic Transcription Pathway (Rattus norvegicus)
Transcriptional Regulation by TP53 (Rattus norvegicus)
TP53 Regulates Transcription of DNA Repair Genes (Rattus norvegicus)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Rattus norvegicus)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Rattus norvegicus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Rattus norvegicus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Rattus norvegicus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Rattus norvegicus)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Rattus norvegicus)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Rattus norvegicus)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Rattus norvegicus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Rattus norvegicus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Rattus norvegicus)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Rattus norvegicus)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Rattus norvegicus)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Pre-transcription Events (Rattus norvegicus)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Rattus norvegicus)
Paused processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Abortive termination of elongation after arrest (Rattus norvegicus)
Aborted elongation complex after arrest [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Elongating transcript encounters a lesion in the template (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Formation of P-TEFb complex (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Resumption of elongation after recovery from pausing (Rattus norvegicus)
Paused processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
TFIIS-mediated recovery of elongation from arrest (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Transcription Elongation (Rattus norvegicus)
Addition of nucleotides leads to transcript elongation (Rattus norvegicus)
Elongation complex [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Formation of RNA Pol II elongation complex (Rattus norvegicus)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Recruitment of elongation factors to form elongation complex (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Elongation complex [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Pol II elongation complex moves on the template as transcript elongates (Rattus norvegicus)
Elongation complex prior to separation [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Separation of elongating transcript from template (Rattus norvegicus)
Elongation complex prior to separation [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II transcribes snRNA genes (Rattus norvegicus)
CBCAP complex binds 7-methylguanosine cap of snRNA (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
General transcription factors bind SNAPc:POU2F1:ZNF143:snRNA gene (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Integrator complex processes the 3' end of snRNA (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Pre-snRNA is elongated and capped with 7-methylguanosine (Rattus norvegicus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Pre-snRNA transcript initiation, Integrator binding, LEC binding (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Rattus norvegicus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Rattus norvegicus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Rattus norvegicus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Signal Transduction (Rattus norvegicus)
Signaling by Nuclear Receptors (Rattus norvegicus)
ESR-mediated signaling (Rattus norvegicus)
Estrogen-dependent gene expression (Rattus norvegicus)
ESR1:ESTG:P-TEFb recruited to paused RNA polymerase II on MYB gene (Rattus norvegicus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Rattus norvegicus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
Signaling by TGFB family members (Rattus norvegicus)
Signaling by TGF-beta Receptor Complex (Rattus norvegicus)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Rattus norvegicus)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Rattus norvegicus)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Rattus norvegicus)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
CDK9 [nucleoplasm] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:Q641Z4
Reference Genes
BioGPS Gene:362110
ENSEMBL:ENSRNOG00000022586
KEGG Gene (Rattus norvegicus):362110
Monarch:362110
NCBI Gene:362110
UCSC:Q641Z4
Reference Transcript
RefSeq:NM_001007743.1
Participates
as an input of
Formation of P-TEFb complex (Rattus norvegicus)
as a component of
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Rattus norvegicus)
P-TEFb complex [nucleoplasm] (Rattus norvegicus)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001007744.1
PRO
Q641Z4
RGD
1359638
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