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Prpf19 [nucleoplasm]
Stable Identifier
R-RNO-5420907
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
nucleoplasm
Synonyms
PRPF19, Q9JMJ4
Locations in the PathwayBrowser
Expand all
DNA Repair (Rattus norvegicus)
Nucleotide Excision Repair (Rattus norvegicus)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Rattus norvegicus)
Dual incision in TC-NER (Rattus norvegicus)
3' incision by ERCC5 (XPG) in TC-NER (Rattus norvegicus)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Rattus norvegicus)
TC-NER incision complex [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Rattus norvegicus)
TC-NER incision complex [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Rattus norvegicus)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Rattus norvegicus)
TC-NER pre-incision complex [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
ERCC5 and RPA bind TC-NER site (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Formation of TC-NER Pre-Incision Complex (Rattus norvegicus)
UVSSA:USP7 deubiquitinates ERCC6 (Rattus norvegicus)
TC-NER pre-incision complex [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Gap-filling DNA repair synthesis and ligation in TC-NER (Rattus norvegicus)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Rattus norvegicus)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Rattus norvegicus)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Rattus norvegicus)
XAB2 complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Metabolism of RNA (Rattus norvegicus)
Processing of Capped Intron-Containing Pre-mRNA (Rattus norvegicus)
mRNA Splicing (Rattus norvegicus)
mRNA Splicing - Major Pathway (Rattus norvegicus)
Formation of the Spliceosomal C* complex (update) (Rattus norvegicus)
Spliceosomal C complex [nucleoplasm] (Rattus norvegicus)
PRP19-CDC5L complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Spliceosomal C* complex [nucleoplasm] (Rattus norvegicus)
PRP19-CDC5L complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Formation of the Spliceosomal P complex and exon ligation (new) (Rattus norvegicus)
Spliceosomal C* complex [nucleoplasm] (Rattus norvegicus)
PRP19-CDC5L complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
Spliceosomal P complex [nucleoplasm] (Rattus norvegicus)
PRP19-CDC5L complex [nucleoplasm] (Rattus norvegicus)
Prpf19 [nucleoplasm] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:Q9JMJ4
Gene Names
Prpf19
Reference Genes
BioGPS Gene:246216 Prpf19
ENSEMBL:ENSRNOG00000020897
KEGG Gene (Rattus norvegicus):246216 Prpf19
Monarch:246216 Prpf19
NCBI Gene:246216 Prpf19
UCSC:Q9JMJ4 Prpf19
Reference Transcript
RefSeq:NM_139333.3 Prpf19
Other Identifiers
10713983
1398867_at
17624127
246216
5643221
5899275
6004117
6061155
6063040
6069743
6083876
6098639
6105533
6313257
6379581
6392326
6405123
6463932
6643459
6663647
6695071
6707723
6726701
A_43_P13386
GE1147016
GE13073
GO:0000077
GO:0000209
GO:0000228
GO:0000244
GO:0000245
GO:0000398
GO:0000974
GO:0003674
GO:0004842
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005662
GO:0005681
GO:0005694
GO:0005737
GO:0005811
GO:0005819
GO:0005856
GO:0006281
GO:0006303
GO:0006397
GO:0006629
GO:0006974
GO:0008104
GO:0008380
GO:0008610
GO:0010498
GO:0016071
GO:0016567
GO:0016607
GO:0016740
GO:0023052
GO:0030154
GO:0030163
GO:0032991
GO:0034450
GO:0035861
GO:0036211
GO:0042802
GO:0043226
GO:0045666
GO:0048026
GO:0048711
GO:0048856
GO:0061630
GO:0065003
GO:0070534
GO:0071006
GO:0071007
GO:0071013
GO:0110165
GO:0140096
ILMN_1354864
PH_rn_0013441
rc_AI071019_at
rc_AI071019_g_at
rc_AI102339_at
rc_AI111653_at
rc_AI137634_at
Participates
as a component of
XAB2 complex [nucleoplasm] (Rattus norvegicus)
PRP19-CDC5L complex [nucleoplasm] (Rattus norvegicus)
Inferred From
PRPF19 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_647549.2
Ensembl
ENSRNOG00000020897
,
ENSRNOT00000028373
,
ENSRNOP00000028373
PRO
Q9JMJ4
RGD
708496
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