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Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane]
Stable Identifier
R-RNO-5688558
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
endoplasmic reticulum-Golgi intermediate compartment membrane
Synonyms
PalmC-YKT6, Q5EGY4
Locations in the PathwayBrowser
Expand all
Metabolism of proteins (Rattus norvegicus)
Post-translational protein modification (Rattus norvegicus)
Asparagine N-linked glycosylation (Rattus norvegicus)
Transport to the Golgi and subsequent modification (Rattus norvegicus)
ER to Golgi Anterograde Transport (Rattus norvegicus)
COPI-mediated anterograde transport (Rattus norvegicus)
ARFGAP, cargo, v-SNAREs and p24 proteins bind nascent COPI complex (Rattus norvegicus)
RAB1:GTP:GBF1:USO1:ARF:GTP:coatomer:ARFGAP1,2,3:PalmC-YKT6:p24 dimers:cargo:spectrin:ankyrin [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ARFGAPs stimulate ARF GTPase activity (Rattus norvegicus)
RAB1:GTP:GBF1:USO1:ARF:GTP:coatomer:ARFGAP1,2,3:PalmC-YKT6:p24 dimers:cargo:spectrin:ankyrin [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
COPII-mediated vesicle transport (Rattus norvegicus)
BET1:GOSR2:STX5 bind v-SNARES on tethered vesicle (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
NSF ATPase activity dissociates cis-SNARE (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE:NSF hexamer:3xSNAP [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
NSF and SNAPs bind cis-SNARE complex (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE:NSF hexamer:3xSNAP [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Vesicle-mediated transport (Rattus norvegicus)
Membrane Trafficking (Rattus norvegicus)
ER to Golgi Anterograde Transport (Rattus norvegicus)
COPI-mediated anterograde transport (Rattus norvegicus)
ARFGAP, cargo, v-SNAREs and p24 proteins bind nascent COPI complex (Rattus norvegicus)
RAB1:GTP:GBF1:USO1:ARF:GTP:coatomer:ARFGAP1,2,3:PalmC-YKT6:p24 dimers:cargo:spectrin:ankyrin [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ARFGAPs stimulate ARF GTPase activity (Rattus norvegicus)
RAB1:GTP:GBF1:USO1:ARF:GTP:coatomer:ARFGAP1,2,3:PalmC-YKT6:p24 dimers:cargo:spectrin:ankyrin [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
COPII-mediated vesicle transport (Rattus norvegicus)
BET1:GOSR2:STX5 bind v-SNARES on tethered vesicle (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
NSF ATPase activity dissociates cis-SNARE (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE:NSF hexamer:3xSNAP [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
NSF and SNAPs bind cis-SNARE complex (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE:NSF hexamer:3xSNAP [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
cis-SNARE [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Ykt6 [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:Q5EGY4
Gene Names
Ykt6
Reference Genes
BioGPS Gene:64351 Ykt6
ENSEMBL:ENSRNOG00000014785
ENSEMBL:ENSRNOG00000014785.4 Ykt6
ENSEMBL:ENSRNOG00055029861
ENSEMBL:ENSRNOG00060031898
ENSEMBL:ENSRNOG00065020406
KEGG Gene (Rattus norvegicus):64351 Ykt6
Monarch:64351 Ykt6
NCBI Gene:64351 Ykt6
UCSC:Q5EGY4 Ykt6
Reference Transcript
RefSeq:NM_031692.2 Ykt6
Other Identifiers
10774037
1372505_at
1387836_at
17691367
5672458
5874809
5955576
5987647
6172310
6206615
6238534
6281417
6316064
6390996
64351
6622973
6673743
AF033027_at
A_43_P15570
A_44_P355628
A_44_P849269
GE13226
GE18228
GO:0003824
GO:0005484
GO:0005737
GO:0005739
GO:0005768
GO:0005783
GO:0005794
GO:0005829
GO:0005886
GO:0006888
GO:0006903
GO:0006904
GO:0016192
GO:0016740
GO:0019706
GO:0031410
GO:0042147
GO:0043226
GO:0060090
GO:0061024
GO:0140096
ILMN_1370341
PH_rn_0011717
rc_AI100775_at
Participates
as a candidate of
ER-to-ERGIC v-SNARES [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
as an input of
ARFGAP, cargo, v-SNAREs and p24 proteins bind nascent COPI complex (Rattus norvegicus)
as a component of
RAB1:GTP:GBF1:USO1:ARF:GTP:coatomer:ARFGAP1,2,3:PalmC-YKT6:p24 dimers:cargo:spectrin:ankyrin [endoplasmic reticulum-Golgi intermediate compartment membrane] (Rattus norvegicus)
Other forms of this molecule
Ykt6 [endoplasmic reticulum membrane]
Ykt6 [ER to Golgi transport vesicle membrane]
Ykt6 [transport vesicle]
Ykt6 [Golgi membrane]
Inferred From
PalmC-YKT6 [endoplasmic reticulum-Golgi intermediate compartment membrane]
(Homo sapiens)
Modified Residues
Name
S-palmitoyl-L-cysteine at 194 (in Homo sapiens)
Coordinate
194
PsiMod Name
S-palmitoyl-L-cysteine [MOD:00115]
PsiMod Definition
A protein modification that effectively converts an L-cysteine residue to S-palmitoyl-L-cysteine.
Cross References
RefSeq
NP_113880.2
Ensembl
ENSRNOT00000020693
,
ENSRNOP00000020693
,
ENSRNOG00000014785
PRO
Q5EGY4
RGD
70897
PDB
3KYQ
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q62931
1
Gosr1 [Golgi membrane]
(R-RNO-6807753)
0.564
6
UniProt:Q08851
5
Stx5 [cytosol]
(R-RNO-9613991)
Stx5 [ER to Golgi transport vesicle membrane]
(R-RNO-5689838)
Stx5 [endoplasmic reticulum-Golgi intermediate compartment membrane]
(R-RNO-5688157)
Stx5 [endoplasmic reticulum membrane]
(R-RNO-5689474)
Stx5 [Golgi membrane]
(R-RNO-6807771)
0.564
6
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