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Ybx1 [nucleoplasm]
Stable Identifier
R-RNO-72041
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
nucleoplasm
Synonyms
YBX1, P62961
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Rattus norvegicus)
Processing of Capped Intron-Containing Pre-mRNA (Rattus norvegicus)
mRNA Splicing (Rattus norvegicus)
mRNA Splicing - Major Pathway (Rattus norvegicus)
Formation of Exon Junction Complex (Rattus norvegicus)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of the Spliceosomal A Complex (Rattus norvegicus)
Spliceosomal A Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Spliceosomal E Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of the Spliceosomal B Complex (Rattus norvegicus)
Spliceosomal A Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Spliceosomal B Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of the active Spliceosomal C (B*) complex (Rattus norvegicus)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Lariat Formation and 5'-Splice Site Cleavage (Rattus norvegicus)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
mRNA Splicing - Minor Pathway (Rattus norvegicus)
ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Rattus norvegicus)
ATAC C Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Rattus norvegicus)
ATAC C Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of AT-AC A complex (Rattus norvegicus)
ATAC A Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of AT-AC B Complex (Rattus norvegicus)
ATAC A Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
ATAC B Complex [nucleoplasm] (Rattus norvegicus)
ATAC A Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
Formation of AT-AC C complex (Rattus norvegicus)
ATAC B Complex [nucleoplasm] (Rattus norvegicus)
ATAC A Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
ATAC C Complex [nucleoplasm] (Rattus norvegicus)
U11 snRNP [nucleoplasm] (Rattus norvegicus)
Ybx1 [nucleoplasm] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:P62961
Gene Names
Ybx1
Reference Genes
BioGPS Gene:500538 Ybx1
ENSEMBL:ENSRNOG00000023786
KEGG Gene (Rattus norvegicus):500538 Ybx1
Monarch:500538 Ybx1
NCBI Gene:500538 Ybx1
UCSC:P62961 Ybx1
Reference Transcript
RefSeq:NM_031563.3 Ybx1
Participant Of
hasComponent
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliceosomal A Complex [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal E Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
U11 snRNP [nucleoplasm]
Other forms of this molecule
Ybx1 [extracellular region]
Inferred From
YBX1 [nucleoplasm] (Homo sapiens)
Cross References
RefSeq
NP_113751.3
Target Pathogen
5b354852be737e166372e870
PRO
P62961
RGD
61843
Interactors (1)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q01728
1
Slc8a1 [plasma membrane]
(R-RNO-425681)
0.462
2
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