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LOC102162880 [nucleoplasm]
Stable Identifier
R-SSC-6781963
Type
Protein [EntityWithAccessionedSequence]
Species
Sus scrofa
Compartment
nucleoplasm
Synonyms
ISY1, A0A5G2RDZ4
Locations in the PathwayBrowser
Expand all
DNA Repair (Sus scrofa)
Nucleotide Excision Repair (Sus scrofa)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Sus scrofa)
Dual incision in TC-NER (Sus scrofa)
3' incision by ERCC5 (XPG) in TC-NER (Sus scrofa)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Sus scrofa)
TC-NER incision complex [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Sus scrofa)
TC-NER incision complex [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Sus scrofa)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Sus scrofa)
TC-NER pre-incision complex [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
ERCC5 and RPA bind TC-NER site (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Formation of TC-NER Pre-Incision Complex (Sus scrofa)
Assembly of the pre-incision complex in TC-NER (Sus scrofa)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
UVSSA:USP7 deubiquitinates ERCC6 (Sus scrofa)
TC-NER pre-incision complex [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Gap-filling DNA repair synthesis and ligation in TC-NER (Sus scrofa)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Sus scrofa)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Sus scrofa)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Metabolism of RNA (Sus scrofa)
Processing of Capped Intron-Containing Pre-mRNA (Sus scrofa)
mRNA Splicing (Sus scrofa)
mRNA Splicing - Major Pathway (Sus scrofa)
Formation of the Spliceosomal Bact complex (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Spliceosomal Bact complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Formation of the Spliceosomal C complex containing intron lariat (Sus scrofa)
Spliceosomal B* complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Spliceosomal C complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Formation of the Spliceosomal C* complex (Sus scrofa)
Spliceosomal C complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Spliceosomal C* complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Formation of the Spliceosomal P complex and exon ligation (Sus scrofa)
Spliceosomal C* complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
Spliceosomal P complex [nucleoplasm] (Sus scrofa)
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
LOC102162880 [nucleoplasm] (Sus scrofa)
External Reference Information
External Reference
UniProt:A0A5G2RDZ4
Gene Names
LOC102162880
Reference Genes
ENSEMBL:ENSSSCG00000038900.3
UCSC:A0A5G2RDZ4 LOC102162880
Other Identifiers
102162880
GO:0000350
GO:0005634
GO:0016071
GO:0043226
GO:0065003
Ssc.2880.1.S1_at
Participates
as a component of
PRP19-CDC5L related complex [nucleoplasm] (Sus scrofa)
XAB2 complex [nucleoplasm] (Sus scrofa)
Inferred From
ISY1 [nucleoplasm]
(Homo sapiens)
Cross References
ENSEMBL
ENSSSCT00000087738
,
ENSSSCP00000072755
,
ENSSSCG00000038900
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