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APEX1 [nucleoplasm]
Stable Identifier
R-XTR-50119
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
Q6P2X0
Locations in the PathwayBrowser
Expand all
DNA Repair (Xenopus tropicalis)
Base Excision Repair (Xenopus tropicalis)
Resolution of Abasic Sites (AP sites) (Xenopus tropicalis)
APEX1 mediates endonucleolytic cleavage at the 5' side of the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of DNA glycosylase by APEX1 (Xenopus tropicalis)
Displacement of MBD4 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of MPG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of MUTYH glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of NTHL1 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of SMUG1 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of TDG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Displacement of UNG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Resolution of AP sites via the multiple-nucleotide patch replacement pathway (Xenopus tropicalis)
Oxidative damage to the AP site (Xenopus tropicalis)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
PCNA-Dependent Long Patch Base Excision Repair (Xenopus tropicalis)
PCNA:POLD,POLE:RPA:RFC and FEN1 bind APEX1 (Xenopus tropicalis)
APEX1:FEN1:PCNA:POLD,POLE:RPA:RFC:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLD,POLE-mediated DNA strand displacement synthesis (Xenopus tropicalis)
APEX1:FEN1:PCNA:POLD,POLE:RPA:RFC:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
APEX1:FEN1:PCNA:POLD,POLE:RPA:RFC:SSB(3'poly-dNMP-displaced 5'ddRP flap)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB incorporates the first 3' dNMP and displaces 5'ddRP at SSB site (Xenopus tropicalis)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB-Dependent Long Patch Base Excision Repair (Xenopus tropicalis)
PARP1,PARP2 dimers and FEN1 bind POLB and displace APEX1 from damaged AP site (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Recruitment of POLB to oxidatively damaged AP site (Xenopus tropicalis)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Resolution of AP sites via the single-nucleotide replacement pathway (Xenopus tropicalis)
Abasic sugar-phosphate removal via the single-nucleotide replacement pathway (Xenopus tropicalis)
Excision of the abasic sugar phosphate (5'dRP) residue at the single strand break (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
Recruitment of POLB to the AP site (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1 [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:Q6P2X0
Reference Genes
BioGPS Gene:394929
ENSEMBL:ENSXETG00000024773
KEGG Gene (Xenopus tropicalis):394929
Monarch:394929
NCBI Gene:394929
Reference Transcript
RefSeq:XM_012958414.2
RefSeq:NM_203976.2
RefSeq:XM_012958408.2
RefSeq:XM_012958402.2
RefSeq:XM_012958414.3
RefSeq:XM_012958408.3
RefSeq:XM_012958402.3
Participates
as an output of
Excision of the abasic sugar phosphate (5'dRP) residue at the single strand break (Xenopus tropicalis)
PARP1,PARP2 dimers and FEN1 bind POLB and displace APEX1 from damaged AP site (Xenopus tropicalis)
as a component of
APEX1:FEN1:PCNA:POLD,POLE:RPA:RFC:SSB(3'poly-dNMP-displaced 5'ddRP flap)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:FEN1:PCNA:POLD,POLE:RPA:RFC:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Xenopus tropicalis)
APEX1:AP-dsDNA [nucleoplasm] (Xenopus tropicalis)
as an input of
Displacement of TDG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of SMUG1 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of UNG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of MPG glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of MUTYH glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of NTHL1 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Displacement of MBD4 glycosylase by APEX1 at the AP site (Xenopus tropicalis)
Inferred From
APEX1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_989307.1
,
XP_012813862.1
,
XP_012813868.1
,
XP_012813862.2
,
XP_012813856.1
,
XP_012813856.2
,
XP_012813868.2
Xenbase
XB-GENE-977072
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