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col8a2 [nucleoplasm]
Stable Identifier
R-XTR-67411
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
XAB2, F6X8P2
Locations in the PathwayBrowser
Expand all
DNA Repair (Xenopus tropicalis)
Nucleotide Excision Repair (Xenopus tropicalis)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Xenopus tropicalis)
Dual incision in TC-NER (Xenopus tropicalis)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Xenopus tropicalis)
TC-NER incision complex [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Xenopus tropicalis)
TC-NER incision complex [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Xenopus tropicalis)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Xenopus tropicalis)
TC-NER pre-incision complex [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Formation of TC-NER Pre-Incision Complex (Xenopus tropicalis)
Assembly of the pre-incision complex in TC-NER (Xenopus tropicalis)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
UVSSA:USP7 deubiquitinates ERCC6 (Xenopus tropicalis)
TC-NER pre-incision complex [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Gap-filling DNA repair synthesis and ligation in TC-NER (Xenopus tropicalis)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Xenopus tropicalis)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Xenopus tropicalis)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Metabolism of RNA (Xenopus tropicalis)
Processing of Capped Intron-Containing Pre-mRNA (Xenopus tropicalis)
mRNA Splicing (Xenopus tropicalis)
mRNA Splicing - Major Pathway (Xenopus tropicalis)
Cleavage at the 3'-Splice Site and Exon Ligation (Xenopus tropicalis)
intron-containing complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Formation of Exon Junction Complex (Xenopus tropicalis)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Formation of an intermediate Spliceosomal C (Bact) complex (Xenopus tropicalis)
Spliceosomal B Complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Formation of the active Spliceosomal C (B*) complex (Xenopus tropicalis)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Lariat Formation and 5'-Splice Site Cleavage (Xenopus tropicalis)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Xenopus tropicalis)
col8a2 [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:F6X8P2
Gene Names
col8a2
Reference Genes
BioGPS Gene:100486732 col8a2
ENSEMBL:ENSXETG00000002611
KEGG Gene (Xenopus tropicalis):100486732 col8a2
Monarch:100486732 col8a2
NCBI Gene:100486732 col8a2
Reference Transcript
RefSeq:XM_002936225.4 col8a2
Other Identifiers
100216162
GO:0000349
GO:0000398
GO:0000974
GO:0003674
GO:0005198
GO:0005201
GO:0005515
GO:0005575
GO:0005576
GO:0005615
GO:0005622
GO:0005634
GO:0006396
GO:0006397
GO:0008150
GO:0022607
GO:0022618
GO:0030198
GO:0031012
GO:0032991
GO:0034641
GO:0043226
GO:0065003
GO:0071007
GO:0071013
GO:0071014
Str.11630.1.A1_s_at
Participant Of
hasComponent
intron-containing complex [nucleoplasm]
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
XAB2 complex [nucleoplasm]
Inferred From
XAB2 [nucleoplasm] (Homo sapiens)
Cross References
RefSeq
XP_002936271.2
Ensembl
ENSXETT00000005594
,
ENSXETP00000005594
,
ENSXETG00000002611
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