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ccnk [nucleoplasm]
Stable Identifier
R-XTR-6796619
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
CCNK, Q0V9U3
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Xenopus tropicalis)
RNA Polymerase II Transcription (Xenopus tropicalis)
Generic Transcription Pathway (Xenopus tropicalis)
Transcriptional Regulation by TP53 (Xenopus tropicalis)
TP53 Regulates Transcription of DNA Repair Genes (Xenopus tropicalis)
CCNK binds CDK12 (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CCNK binds CDK13 (Xenopus tropicalis)
CCNK:CDK13 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Xenopus tropicalis)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA Polymerase II Pre-transcription Events (Xenopus tropicalis)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Xenopus tropicalis)
Paused processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Abortive termination of elongation after arrest (Xenopus tropicalis)
Aborted elongation complex after arrest [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Formation of P-TEFb complex (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Resumption of elongation after recovery from pausing (Xenopus tropicalis)
Paused processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
TFIIS-mediated recovery of elongation from arrest (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA Polymerase II Transcription Elongation (Xenopus tropicalis)
Addition of nucleotides leads to transcript elongation (Xenopus tropicalis)
Elongation complex [nucleoplasm] (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Formation of RNA Pol II elongation complex (Xenopus tropicalis)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Recruitment of elongation factors to form elongation complex (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Elongation complex [nucleoplasm] (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Pol II elongation complex moves on the template as transcript elongates (Xenopus tropicalis)
Elongation complex prior to separation [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Separation of elongating transcript from template (Xenopus tropicalis)
Elongation complex prior to separation [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II transcribes snRNA genes (Xenopus tropicalis)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Integrator complex processes the 3' end of snRNA (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
Pre-snRNA is elongated and capped with 7-methylguanosine (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
ccnk [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:Q0V9U3
Gene Names
ccnk
Reference Genes
BioGPS Gene:779776 ccnk
ENSEMBL:ENSXETG00000011438
KEGG Gene (Xenopus tropicalis):779776 ccnk
Monarch:779776 ccnk
NCBI Gene:779776 ccnk
Reference Transcript
RefSeq:NM_001078855.1 ccnk
Other Identifiers
779776
GO:0006351
GO:0006355
GO:0006357
GO:0016538
GO:0098772
Participates
as an input of
Formation of P-TEFb complex (Xenopus tropicalis)
CCNK binds CDK13 (Xenopus tropicalis)
CCNK binds CDK12 (Xenopus tropicalis)
as a component of
CCNK:CDK13 [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12 [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
Inferred From
CCNT1,CCNT2,CCNK [nucleoplasm]
(Homo sapiens)
CCNK [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001072323.1
Xenbase
XB-GENE-478709
Ensembl
ENSXETT00000024974
,
ENSXETG00000011438
,
ENSXETP00000024974
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