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Ref1 [nucleoplasm]
Stable Identifier
R-DME-156649
Type
Protein [EntityWithAccessionedSequence]
Species
Drosophila melanogaster
Compartment
nucleoplasm
Synonyms
ALYREF, Q9V3E7
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Drosophila melanogaster)
RNA Polymerase II Transcription (Drosophila melanogaster)
RNA Polymerase II Transcription Termination (Drosophila melanogaster)
Cleavage of mRNA at the 3'-end (Drosophila melanogaster)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Metabolism of RNA (Drosophila melanogaster)
Processing of Capped Intron-Containing Pre-mRNA (Drosophila melanogaster)
Transport of Mature Transcript to Cytoplasm (Drosophila melanogaster)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Drosophila melanogaster)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Drosophila melanogaster)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Drosophila melanogaster)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (minus DDX39B) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the export-competent mRNP complex through the NPC (Drosophila melanogaster)
NPC:NXF1,2:NXT1:EJC:CBC:mRNA [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of Mature mRNAs Derived from Intronless Transcripts (Drosophila melanogaster)
Transport of Mature mRNA Derived from an Intronless Transcript (Drosophila melanogaster)
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC (Drosophila melanogaster)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the Mature intronless transcript derived mRNA:TAP:Aly/Ref Complex through the NPC (Drosophila melanogaster)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the SLBP Dependant Mature mRNA (Drosophila melanogaster)
Docking of Mature Replication Dependent Histone mRNA with the NPC (Drosophila melanogaster)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the Mature IntronlessTranscript Derived Histone mRNA:SLBP:TAP:Aly/Ref complex through the NPC (Drosophila melanogaster)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the SLBP independent Mature mRNA (Drosophila melanogaster)
Docking of Mature Histone mRNA complex:TAP at the NPC (Drosophila melanogaster)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Transport of the Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref Complex through the NPC (Drosophila melanogaster)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
mRNA 3'-end processing (Drosophila melanogaster)
Cleavage of mRNA at the 3'-end (Drosophila melanogaster)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
mRNA polyadenylation (Drosophila melanogaster)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
mRNA Splicing (Drosophila melanogaster)
mRNA Splicing - Major Pathway (Drosophila melanogaster)
Formation of the Spliceosomal C* complex (Drosophila melanogaster)
Spliceosomal C complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Spliceosomal C* complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Formation of the Spliceosomal P complex and exon ligation (Drosophila melanogaster)
Spliceosomal C* complex [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
Spliceosomal P complex [nucleoplasm] (Drosophila melanogaster)
spliced mRNA:EJC:CBC complex:Alternative splicing factor [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
Ref1 [nucleoplasm] (Drosophila melanogaster)
External Reference Information
External Reference
UniProt:Q9V3E7
Gene Names
Ref1
Reference Genes
BioGPS Gene:44029 Ref1
CTD Gene:44029 Ref1
ENSEMBL:FBgn0010774
FlyBase:FBgn0010774
KEGG Gene (Drosophila melanogaster):Dmel_CG1101 Ref1
Monarch:44029 Ref1
NCBI Gene:44029 Ref1
UCSC:Q9V3E7 Ref1
Reference Transcript
RefSeq:NM_143711.3 Ref1
Other Identifiers
154296_at
1634966_a_at
1640178_at
44029
GO:0000346
GO:0000398
GO:0003676
GO:0003723
GO:0003729
GO:0005634
GO:0005635
GO:0005654
GO:0006406
GO:0006913
GO:0016071
GO:0031965
GO:0043226
GO:0071011
GO:0071013
Participates
as a component of
Spliceosomal Bact complex [nucleoplasm] (Drosophila melanogaster)
Spliceosomal B complex [nucleoplasm] (Drosophila melanogaster)
Spliceosomal Pre-B complex [nucleoplasm] (Drosophila melanogaster)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Drosophila melanogaster)
Spliceosomal C complex [nucleoplasm] (Drosophila melanogaster)
Spliceosomal C* complex [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
TREX (DDX39B:ATP) [nucleoplasm] (Drosophila melanogaster)
TREX (minus DDX39B) [nucleoplasm] (Drosophila melanogaster)
EJC [nucleoplasm] (Drosophila melanogaster)
as an input of
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC (Drosophila melanogaster)
Docking of Mature Replication Dependent Histone mRNA with the NPC (Drosophila melanogaster)
Docking of Mature Histone mRNA complex:TAP at the NPC (Drosophila melanogaster)
Other forms of this molecule
Ref1 [cytosol]
Inferred From
ALYREF, FYTTD1, LUZP4 [nucleoplasm]
(Homo sapiens)
ALYREF [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_651968.1
Flybase
FBgn0010774
PRO
Q9V3E7
Interactors (5)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9V3E7
2
Ref1 [nucleoplasm]
(R-DME-156649)
Ref1 [cytosol]
(R-DME-158482)
0.488
2
UniProt:Q9VAF3 Q9VAF3
0.488
2
UniProt:Q9VGQ6
15
ZNF791 [nucleoplasm]
(R-DME-3110236-3)
ZNF799 [nucleoplasm]
(R-DME-3110244-3)
ZNF433 [nucleoplasm]
(R-DME-1247520-3)
ZNF442 [nucleoplasm]
(R-DME-1247541-3)
ZNF441 [nucleoplasm]
(R-DME-1247518-3)
ZNF627 [nucleoplasm]
(R-DME-2127594-3)
ZNF625 [nucleoplasm]
(R-DME-2127589-3)
ZNF14 [nucleoplasm]
(R-DME-975030-3)
ZNF101 [nucleoplasm]
(R-DME-975009-3)
ZNF709 [nucleoplasm]
(R-DME-2454153-3)
ZNF700 [nucleoplasm]
(R-DME-2454157-3)
ZNF517 [nucleoplasm]
(R-DME-1973869-3)
ZNF563 [nucleoplasm]
(R-DME-1973875-3)
ZNF443 [nucleoplasm]
(R-DME-1247867-3)
ZNF696 [nucleoplasm]
(R-DME-2454138-3)
0.488
2
UniProt:Q9VEF0
7
ZNF383 [nucleoplasm]
(R-DME-1247521-2)
ZNF707 [nucleoplasm]
(R-DME-2454161-2)
ZNF692 [nucleoplasm]
(R-DME-2454144-2)
ZNF671 [nucleoplasm]
(R-DME-2248876-2)
ZNF660 [nucleoplasm]
(R-DME-2248875-2)
ZNF667 [nucleoplasm]
(R-DME-2248870-2)
ZNF662 [nucleoplasm]
(R-DME-2248867-2)
0.488
2
UniProt:Q24568 NETB
0.462
2
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