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Dmel\CG9667 [nucleoplasm]
Stable Identifier
R-DME-6781963
Type
Protein [EntityWithAccessionedSequence]
Species
Drosophila melanogaster
Compartment
nucleoplasm
Synonyms
ISY1, Q9VHV6
Locations in the PathwayBrowser
Expand all
DNA Repair (Drosophila melanogaster)
Nucleotide Excision Repair (Drosophila melanogaster)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Drosophila melanogaster)
Dual incision in TC-NER (Drosophila melanogaster)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Drosophila melanogaster)
TC-NER incision complex [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Drosophila melanogaster)
TC-NER incision complex [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Drosophila melanogaster)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Drosophila melanogaster)
TC-NER pre-incision complex [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Drosophila melanogaster)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Formation of TC-NER Pre-Incision Complex (Drosophila melanogaster)
UVSSA:USP7 deubiquitinates ERCC6 (Drosophila melanogaster)
TC-NER pre-incision complex [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Gap-filling DNA repair synthesis and ligation in TC-NER (Drosophila melanogaster)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Drosophila melanogaster)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Drosophila melanogaster)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Metabolism of RNA (Drosophila melanogaster)
Processing of Capped Intron-Containing Pre-mRNA (Drosophila melanogaster)
mRNA Splicing (Drosophila melanogaster)
mRNA Splicing - Major Pathway (Drosophila melanogaster)
Formation of the Spliceosomal C* complex (Drosophila melanogaster)
Spliceosomal C complex [nucleoplasm] (Drosophila melanogaster)
PRP19-CDC5L related complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Spliceosomal C* complex [nucleoplasm] (Drosophila melanogaster)
PRP19-CDC5L related complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Formation of the Spliceosomal P complex and exon ligation (Drosophila melanogaster)
Spliceosomal C* complex [nucleoplasm] (Drosophila melanogaster)
PRP19-CDC5L related complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
Spliceosomal P complex [nucleoplasm] (Drosophila melanogaster)
PRP19-CDC5L related complex [nucleoplasm] (Drosophila melanogaster)
Dmel\CG9667 [nucleoplasm] (Drosophila melanogaster)
External Reference Information
External Reference
UniProt:Q9VHV6
Gene Names
Dmel\CG9667
Reference Genes
BioGPS Gene:40960 Dmel\CG9667
ENSEMBL:FBgn0037550
Flybase:FBgn0037550
Monarch:40960 Dmel\CG9667
NCBI Gene:40960 Dmel\CG9667
UCSC:Q9VHV6 Dmel\CG9667
Reference Transcript
RefSeq:NM_141511.3 Dmel\CG9667
Other Identifiers
149475_at
1638190_at
40960
GO:0000350
GO:0000389
GO:0000398
GO:0000974
GO:0003723
GO:0005634
GO:0016071
GO:0043226
GO:0065003
GO:0071011
GO:0071013
GO:0071014
GO:0071020
Participates
as a component of
PRP19-CDC5L related complex [nucleoplasm] (Drosophila melanogaster)
XAB2 complex [nucleoplasm] (Drosophila melanogaster)
Inferred From
ISY1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_649768.2
Flybase
FBgn0037550
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9VH90
2
trbd [cytosol]
(R-DME-6781939)
trbd [cytosol]
(R-DME-688989)
0.488
2
UniProt:Q9V437
1
Prp18 [nucleoplasm]
(R-DME-5688093)
0.488
2
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