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vcanb [extracellular region]
Stable Identifier
R-DRE-2063978
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
extracellular region
Synonyms
C6S-VCAN, Q75ZI3
Locations in the PathwayBrowser
Expand all
Metabolism (Danio rerio)
Metabolism of carbohydrates (Danio rerio)
Glycosaminoglycan metabolism (Danio rerio)
Chondroitin sulfate/dermatan sulfate metabolism (Danio rerio)
CS/DS degradation (Danio rerio)
DSPG and CSPG translocate to the lysosome for degradation (Danio rerio)
CSPGs [extracellular region] (Danio rerio)
C6S-PGs [extracellular region] (Danio rerio)
vcanb [extracellular region] (Danio rerio)
Chondroitin sulfate biosynthesis (Danio rerio)
CSPG is secreted (Danio rerio)
CSPGs [extracellular region] (Danio rerio)
C6S-PGs [extracellular region] (Danio rerio)
vcanb [extracellular region] (Danio rerio)
External Reference Information
External Reference
UniProt:Q75ZI3
Gene Names
vcanb
Reference Genes
BioGPS Gene:323465 vcanb
CTD Gene:323465 vcanb
ENSEMBL:ENSDARG00000009401
KEGG Gene (Danio rerio):323465 vcanb
Monarch:323465 vcanb
NCBI Gene:323465 vcanb
Reference Transcript
RefSeq:NM_214688.1 vcanb
Participates
as a member of
C6S-PGs [extracellular region] (Danio rerio)
Other forms of this molecule
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
Inferred From
C6S-VCAN [extracellular region]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63512) at unknown position
Modification
beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-GalNAc6S-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
NP_999853.1
ZFIN
ZDB-GENE-030131-2185
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