Reactome | vcanb [Golgi lumen]

vcanb [Golgi lumen]

Stable Identifier

R-DRE-2064218

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

Golgi lumen

Synonyms

chondroitin(1)-VCAN, Q75ZI3

Locations in the PathwayBrowser

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Metabolism (Danio rerio)

- Metabolism of carbohydrates (Danio rerio)
  - Glycosaminoglycan metabolism (Danio rerio)
    - Chondroitin sulfate/dermatan sulfate metabolism (Danio rerio)
      - Chondroitin sulfate biosynthesis (Danio rerio)
        
        CHSY1 transfers GlcA to chondroitin (Danio rerio)
        
        chondroitin(1)-core proteins [Golgi lumen] (Danio rerio)
        
        vcanb [Golgi lumen] (Danio rerio)

External Reference Information

External Reference

UniProt:Q75ZI3

Gene Names

vcanb

Reference Genes

BioGPS Gene:323465 vcanb

CTD Gene:323465 vcanb

ENSEMBL:ENSDARG00000009401

KEGG Gene (Danio rerio):323465 vcanb

Monarch:323465 vcanb

NCBI Gene:323465 vcanb

Reference Transcript

RefSeq:NM_214688.1 vcanb

Participates

as a member of

chondroitin(1)-core proteins [Golgi lumen] (Danio rerio)

Other forms of this molecule

vcanb [Golgi lumen]

vcanb [extracellular region]

vcanb [lysosomal lumen]

vcanb [extracellular region]

vcanb [lysosomal lumen]

Inferred From

chondroitin(1)-VCAN [Golgi lumen] (Homo sapiens)

Modified Residues

Name

O-xylosyl-L-serine (ChEBI:63506) at unknown position

Modification

beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group

PsiMod Name

O-xylosyl-L-serine

PsiMod Definition

A protein modification that effectively converts an L-serine residue to O3-xylosylserine.

Cross References

RefSeq

NP_999853.1

ZFIN

ZDB-GENE-030131-2185

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